Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1343g00005 ATGGCGGCATCAATGGACCTTGAAGTTAAACAAATGGATGTGAAGACCATATTTCTTCACGACAACCTTGAAGAAGGAAATAAATCAACCAATTGCAATGTTAGCAATTCCCCAAGAAAAAATAATTCAGAAACAACAAGATCTTTTCCCAAGTTAAAAGAAATTGGTAGATCTTCTCCGAGCTTAAGCGAGGAGCTAAAAGCTTATTCCCATATTCGGAAGTTCTTCAATGAGCTCATTTTGGGAAAAAGCTATTTTAAATCTCAGAATTTACTTGGTGAGTGTGGATTTGGATGGGTTTACAAAGGTTGGATCAGTGAGAATGAGAACTCTTCAGCAAGACCTGGAATGGGGCTTTCAGTTGCTTTGAAGACTCATAACCAGAATGGACTTCAGGGCCATAGGGAATGGCTGGCTGAAGTTAACTTTCTTAGGCAACTCCGTCATCCAAATCTAGTTAAATTGATTGGTTTTTGCATTGAAGATGATAAAAGGCTACTAGTATACGAGTTCATGCTTCGAGGAAGCTTGGAGAATCATCAGTTTAAGAGATATGTGTCCCTTCAATGGTCAATCAAAATGAGAATTGTGCTTGCTGCTACAAAGGACCTTGCATTTCTACACGAGAAAGCTGAAAGACCAATGATATTTCGAGACTGCCAAACATTTAATATTCTATTGGATTTGGAATACAATTCAAAATTTTCCTATTTTGGGCTTGCTAAAGATGCTCAAGAGAGAGACTTAACTCAAGTTACAACTCAAATGATGGGAACAGATGGCTATGCAACCGTTGATTATGTTATGACGGGTTAG 816 0.3811 MAASMDLEVKQMDVKTIFLHDNLEEGNKSTNCNVSNSPRKNNSETTRSFPKLKEIGRSSPSLSEELKAYSHIRKFFNELILGKSYFKSQNLLGECGFGWVYKGWISENENSSARPGMGLSVALKTHNQNGLQGHREWLAEVNFLRQLRHPNLVKLIGFCIEDDKRLLVYEFMLRGSLENHQFKRYVSLQWSIKMRIVLAATKDLAFLHEKAERPMIFRDCQTFNILLDLEYNSKFSYFGLAKDAQERDLTQVTTQMMGTDGYATVDYVMTG 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1343g00005 271 Pfam Protein tyrosine and serine/threonine kinase 88 254 IPR001245 GO:0004672|GO:0006468
Gabi1343g00005 271 SUPERFAMILY Protein kinase-like (PK-like) 70 268 IPR011009 -
Gabi1343g00005 271 Gene3D Phosphorylase Kinase; domain 1 72 171 - -
Gabi1343g00005 271 PANTHER OS01G0588500 PROTEIN-RELATED 46 271 - -
Gabi1343g00005 271 MobiDBLite consensus disorder prediction 28 55 - -
Gabi1343g00005 271 MobiDBLite consensus disorder prediction 28 45 - -
Gabi1343g00005 271 SMART tyrkin_6 86 271 IPR020635 GO:0004713|GO:0006468
Gabi1343g00005 271 ProSiteProfiles Protein kinase domain profile. 86 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1343g00005 271 Gene3D Transferase(Phosphotransferase) domain 1 172 271 - -
Gabi1343g00005 271 FunFam Serine/threonine-protein kinase BIK1 54 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1343g00005 Gabi-Chr1343 98916 124240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1343g00005 76 271 Glycoside Hydrolase AT3G07070 44.221 4.84e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi1343g00005 PK_Tyr_Ser-Thr 7.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1343g00005 - - qsa:O6P43_009064 288.5