Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1343g00004 ATGTCCATTTTTTTCCCTTGTAAATCAGCAGGAAGTAGATCAACCAATGGCAATTTCTCCTTCATTGAGCTCATGTTGGCAACAAGCTATTTTAAACCTCAGAATTTACTTGGTGAGTGTGGATTTCGATGTGTTAACAAAGGTTGGATCAGTGAGAATGAGAACTCTTCAGCAAGACCTGGAATGGGGCTTTCAGTTGCTCTAAAGACTCATAACCAGAATGCACTTGAGGGCTATAGGAAATGGCTGGCTGAAGTTAATTATCTTAGGGAACTCCGTCATCCAAATCTAGTTAAATTGATTGGTTATTGCATTGAAGATGATAAAAGGGTACTAGTATATGAGTTCATGCTTCGAGGAAGCTCGGAGAATCACCAGTTTAAGAGATGTGTGTCCCTTCAATGGTCAATCAGAATGAAAATTATGTTTGGTGCTGTAAAGGACCTTGCATTTCTGCACGAGAAAGCTGAAAGGCCAATGATATTTGGAGACTTCAAAACTTCTAATATCCCATTGGATTTGGAATACATTGCAAAATTTTCTGATTTTGGGCTTACAAAAGATGCTCAAGAGGAAGACTTAACTCATGTTTCAACTCAAGTGATGGGAACATATTGCTATGCAGCCCTTGATTATATGATGGCGGCACACAAACAGAAGCTTTATGGGAATGCCTGGCCCATAGTTTATTGGTACATTATATCGTCCCATGGTGGGGTTTGTTCTTTTGATGAATGTCTCTTTGTTCTGGGATGGTTCTACAATTTTGAGCCTTTACCAAATTTTGTTAATTTTGCTTTTGCTTTTGCATTTGGGGGTTTTCTTATTTTATTCCCATCTTTGGAAGTTCTCCTACAAGAGTTCAAGTTGGCCACGAGCAATTTTAAACCTCAGAATTTACTTGGTGAGTGTGGATTTGGATGTGATTACAAAGGTTGGATCAGTGAGAATGAGAGCTCTTCAGCAAGATCTAGAATAGAGCTTTCAATTGCTATGAAAGAAGAAAGTAGATCAACAACCAATCACAATGCTAGAGAGAAACCAGTTGCTTCTGATGTATCCCCAAGAAACAATAATCCAAGAAGAGCAAGATCATCTCCCAAGTTAAAAGGAATTGCTACATCTTCTTCAAGCTTAAGAGAGGAGCTAAGTGCTTATTCCAACCTTCACAACTTCTCCTTCAATGTGCTCAAGGTGGCAACAAGCAATTTCAAACCTCAAATTTTGCTTGGTGAAGACTCATAA 1245 0.3871 MSIFFPCKSAGSRSTNGNFSFIELMLATSYFKPQNLLGECGFRCVNKGWISENENSSARPGMGLSVALKTHNQNALEGYRKWLAEVNYLRELRHPNLVKLIGYCIEDDKRVLVYEFMLRGSSENHQFKRCVSLQWSIRMKIMFGAVKDLAFLHEKAERPMIFGDFKTSNIPLDLEYIAKFSDFGLTKDAQEEDLTHVSTQVMGTYCYAALDYMMAAHKQKLYGNAWPIVYWYIISSHGGVCSFDECLFVLGWFYNFEPLPNFVNFAFAFAFGGFLILFPSLEVLLQEFKLATSNFKPQNLLGECGFGCDYKGWISENESSSARSRIELSIAMKEESRSTTNHNAREKPVASDVSPRNNNPRRARSSPKLKGIATSSSSLREELSAYSNLHNFSFNVLKVATSNFKPQILLGEDS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1343g00004 414 ProSiteProfiles Protein kinase domain profile. 31 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1343g00004 414 FunFam Serine/threonine-protein kinase BIK1 7 116 - -
Gabi1343g00004 414 Gene3D Phosphorylase Kinase; domain 1 279 357 - -
Gabi1343g00004 414 MobiDBLite consensus disorder prediction 334 373 - -
Gabi1343g00004 414 PANTHER OS01G0588500 PROTEIN-RELATED 285 336 - -
Gabi1343g00004 414 MobiDBLite consensus disorder prediction 343 373 - -
Gabi1343g00004 414 Gene3D Transferase(Phosphotransferase) domain 1 117 225 - -
Gabi1343g00004 414 SUPERFAMILY Protein kinase-like (PK-like) 17 215 IPR011009 -
Gabi1343g00004 414 Gene3D Phosphorylase Kinase; domain 1 8 116 - -
Gabi1343g00004 414 Pfam Protein tyrosine and serine/threonine kinase 35 215 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1343g00004 Gabi-Chr1343 75472 98244 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1343g00004 19 212 Glycoside Hydrolase AT3G07070 44.162 7.12e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi1343g00004 PK_Tyr_Ser-Thr 4.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1343g00004 - - qsa:O6P43_009064 271.937