Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1343g00001 ATGACTGAAGCGAAAGACCCGGCGATCAAGCTCTTTGGGAAGACGATACCGGTGCCGGAGATCCCGGACGGATCCAAAGACTCCACCGGAGCTCCAGCTTCATCTTCTGGTGATGTTGTTGATGATGGTGTTGATCAGGATCATGCTTCTTCCAGCAACTCTTTCAATGCCAAGGAAGGTGAAGAGCATGAGATTGACCAGGACACAATGGGAGAGGAACCAGCTGAGAGTAAGAAGGAAGACGGATCCCCCATCCAATTGTCTGAAGAGGTCACCAATATTGATACAGCCTCAAGATCAGGGGAAGAATGTATCAACCCCTCCACTAAGGAGGAAGCTATTACTTTGAAAACTTCAAAGTCTGAAGAAGAACATGGTGAGAATTCACAAGATAAGACCCTGAAAAAACCAGACAAAATACTGCCTTGCCCCCGCTGTAATAGCATGGACACCAAGTTCTGCTATTACAATAATTACAATGTCAACCAACCACGTCATTTTTGTAAGAATTGTCAGAGATATTGGACTGCTGGTGGGGCAATGAGGAATGTGCCTGTTGGTGCTGGTCGCAGGAAGAATAAGAACTCTGCTCCTCACTATCATCAGATAACTGTCCCTGAAGCAGCAATCCAGAATTCTCAGTCAGACTTGCCAAATGGAGTCCATCATCATTCCTTGAATTGTAATACCACAGTGCTTGCATTTGGATCTGATGCACCGTTGTGTGAATCAATGACATCTGTTTTGAACCTCGCTGATAAAGCAGCGAACGATTGCACAAGGAATGAACTTAATAGACTAGAAGAACTAAGAATTCCTGTTCCCTGTGATGGCGGAGAAAAAGGAAATGATCATTCCAATAAATCTTCTGTCACATCAACAAAGTCAATAGAAGGTGCAACCATCAATGGGTCCCAAGAACAAGTTATACCGAATTGTCAAAGCTTCCCACCTCAAGTTCCCTACTTTCCGGGTGCCCCTTGGCCTTTCCCATGGAATCCAGCACATTGGAGCTCTCCAGTACCACCACCTGCTTTTCTCCCTCAAGGATTTACCATGCCACTCTATCCTGCAGCAGCTTGTTGGGGTTTTACTGTGCCGGGTGCATGGAACATCCCATGGCTAGCACAACCTTCATCACCAAATAGTATAATCCCTAACTCTGGTCCTAACTCCGGTCCTAACTCCCCTACCTTGGGAAAACATTCAAGGGAAGAAAATATGCTCAAATCAAATGACACAGTAGGGAGGGGTGAACATAGCAAAGGAAATAGTAAAGAAAAGTGCCTTTGGGTTCCGAAAACATTGAGGATTGATGACCTAGGAGAAGCAGCAAAAAGCTCTATATGGACAACTCTCGGAATCACAAATAATAAGGCAGACTCAATTCATGGGGGAGAACTCTTTAAAGCATTTCCATCAAAGGGTGATGAAAAAAATCACATAATGCAAAACTCACCAGTCTTGCAGGCCAATCCAGCAGCATTGTCTAGGTCAATTAACTTTCATGAGACCTCATAA 1521 0.4458 MTEAKDPAIKLFGKTIPVPEIPDGSKDSTGAPASSSGDVVDDGVDQDHASSSNSFNAKEGEEHEIDQDTMGEEPAESKKEDGSPIQLSEEVTNIDTASRSGEECINPSTKEEAITLKTSKSEEEHGENSQDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNSAPHYHQITVPEAAIQNSQSDLPNGVHHHSLNCNTTVLAFGSDAPLCESMTSVLNLADKAANDCTRNELNRLEELRIPVPCDGGEKGNDHSNKSSVTSTKSIEGATINGSQEQVIPNCQSFPPQVPYFPGAPWPFPWNPAHWSSPVPPPAFLPQGFTMPLYPAAACWGFTVPGAWNIPWLAQPSSPNSIIPNSGPNSGPNSPTLGKHSREENMLKSNDTVGRGEHSKGNSKEKCLWVPKTLRIDDLGEAAKSSIWTTLGITNNKADSIHGGELFKAFPSKGDEKNHIMQNSPVLQANPAALSRSINFHETS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1343g00001 506 PANTHER CYCLIC DOF FACTOR 2 3 506 IPR045174 GO:0003700|GO:0006355
Gabi1343g00001 506 MobiDBLite consensus disorder prediction 383 403 - -
Gabi1343g00001 506 MobiDBLite consensus disorder prediction 115 137 - -
Gabi1343g00001 506 MobiDBLite consensus disorder prediction 86 104 - -
Gabi1343g00001 506 MobiDBLite consensus disorder prediction 383 402 - -
Gabi1343g00001 506 Pfam Dof domain, zinc finger 138 195 IPR003851 GO:0003677|GO:0006355
Gabi1343g00001 506 MobiDBLite consensus disorder prediction 1 137 - -
Gabi1343g00001 506 ProSitePatterns Zinc finger Dof-type signature. 143 179 IPR003851 GO:0003677|GO:0006355
Gabi1343g00001 506 ProSiteProfiles Zinc finger Dof-type profile. 141 195 IPR003851 GO:0003677|GO:0006355
Gabi1343g00001 506 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1343g00001 Gabi-Chr1343 7528 10879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1343g00001 6 506 C2C2-Dof Transcription Factor Family AT5G39660 43.774 8.01e-105 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi1343g00001 zf-Dof 3.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1343g00001 - - gmx:100788247 731.095