Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1342g00013 ATGGATTCAGCAACGGCAGCTCCACCGTCGCCGGAGCTGGACCTCGACAATCTCAGAGCACTCAAAGTCCTCGGAAAAGGTGCCATGGGCACAGTCTTCCTCGTTCTCGACACCACCACCGCCGCCACCCCCTTCGCACTCAAAGTGGTGGACAAAACCTCCATCCACGCCAAGCTCGACGCCGACCGCCGCGCCCGCTGGGAAATCCAGGTCCTCTCCCAACTTTCCCACCCATTCCTTCCTTCAATTCTGGGCACATTCGAATCTCAACAGTTCCTCGCGTGGGCCCTGCCTTACTGCCCCGGCGGCGACCTTAACGTCCTCCGTTACCGTCAAACTGACCGCGTCTTCTCCCCCGCCGTCATCCGCTTCTACCTCGCCGAGATCCTCTGCGCTCTCGACCACCTCCATAGCATGGGCATCGCCTACCGCGATTTAAAGCCAGAGAATGTCCTCATTCAACGTTCCGGTCACGTGACCCTCACGGACTTCGATCTCTCTCGCAAGCTCATACCAAACACCATCAAAATCACTGATTCTTCTATACCCTTGCCAGATTCCAAGCCTCCAGAACCTCCCCGGAAACATTGCCGGAACTTCTCCCGGTGGATCCCGCTCCTTCCGCCGGACACGAGTCATCATAGCATTAACGGCTTGAAGAAGACCAAGTCCGCTCGAGTCAGCCCGGTGAGTCGACGGAAGCCGAGTTTATCCAACGGCGAACGGTCCAACTCGTTCGTCGGCACGGAGGAGTACGTTTCGCCGGAGGTCGTCCGCGGCGACGGCCACGAGTTCGCCGTTGACTGGTGGGCCCTGGGGATACTCACCTACGAAATGATGTACGGTACGACGCCGTTCAAGGGGAAGAACCGGAAGGAAACGTTCCGAAACGTGGTGACGAAACTGCCGGCGTTCGTCGGGAAACGTTCGGCGTTAACGGACCTGATAGAGAAGTTGTTGGAAAAGGACCCTGCACAGCGATTGGGTTACGCGCGAGGCGCTGCGGAGATCAAGGAGCACGAGTTCTTCAGAGGGGTTCGGTGGGATCTATTGACGGAATTGGAGCGGCCGCCGTTCATTCCGTCGAGAGATGACGGTGTCGGAGAATCGCTGGAGAAATTGTTAACCGGAAATCGAGGCATGGACATTAGGGATTACTTCCAGAGCTTGAAATCGCCGTCGTTGCCGGCTTCGCCGTCACCATCACCGTCTTCCAAGTTTAAAAGAAATGTTTCTCTCTCAGAATTCTGA 1251 0.5691 MDSATAAPPSPELDLDNLRALKVLGKGAMGTVFLVLDTTTAATPFALKVVDKTSIHAKLDADRRARWEIQVLSQLSHPFLPSILGTFESQQFLAWALPYCPGGDLNVLRYRQTDRVFSPAVIRFYLAEILCALDHLHSMGIAYRDLKPENVLIQRSGHVTLTDFDLSRKLIPNTIKITDSSIPLPDSKPPEPPRKHCRNFSRWIPLLPPDTSHHSINGLKKTKSARVSPVSRRKPSLSNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMMYGTTPFKGKNRKETFRNVVTKLPAFVGKRSALTDLIEKLLEKDPAQRLGYARGAAEIKEHEFFRGVRWDLLTELERPPFIPSRDDGVGESLEKLLTGNRGMDIRDYFQSLKSPSLPASPSPSPSSKFKRNVSLSEF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1342g00013 416 MobiDBLite consensus disorder prediction 212 244 - -
Gabi1342g00013 416 Gene3D Phosphorylase Kinase; domain 1 18 103 - -
Gabi1342g00013 416 MobiDBLite consensus disorder prediction 221 244 - -
Gabi1342g00013 416 ProSiteProfiles Protein kinase domain profile. 18 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1342g00013 416 SUPERFAMILY Protein kinase-like (PK-like) 15 394 IPR011009 -
Gabi1342g00013 416 MobiDBLite consensus disorder prediction 391 416 - -
Gabi1342g00013 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Gabi1342g00013 416 MobiDBLite consensus disorder prediction 390 416 - -
Gabi1342g00013 416 PANTHER FLIPPASE KINASE 1-RELATED 12 363 - -
Gabi1342g00013 416 ProSitePatterns Protein kinases ATP-binding region signature. 24 48 IPR017441 GO:0005524
Gabi1342g00013 416 FunFam Serine/threonine-protein kinase UCNL 18 103 - -
Gabi1342g00013 416 Gene3D Transferase(Phosphotransferase) domain 1 104 174 - -
Gabi1342g00013 416 Gene3D Transferase(Phosphotransferase) domain 1 239 362 - -
Gabi1342g00013 416 Pfam Protein kinase domain 21 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1342g00013 416 Pfam Protein kinase domain 237 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1342g00013 416 SMART serkin_6 18 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1342g00013 416 FunFam Serine/threonine-protein kinase OXI1 104 172 - -
Gabi1342g00013 416 FunFam Serine/threonine-protein kinase OXI1 241 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1342g00013 Gabi-Chr1342 201209 202671 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1342g00013 13 416 AGC Kinase Gene Family AT3G20830 59.905 9.75e-162 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gabi1342g00013 Pkinase 2.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1342g00013 - - gmx:100785281 635.95