Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1342g00012 ATGAACAACAACTGGCTTTCTTTCCCCCTTTCTCCTACTCATTCTTCTTTACCAGCTCATGATATCCAAGCAATTCCATATCATCAATTTTCTCTTGGGTTAGTGAACGAGAACATCGAAAACCCTTTCCAAAATCATGATTGGAATCTGATTAATACTCCCAGCAACAACGAAGTTCCAAAGGTTGCAGATTTTCTTGGTGTGAGCAAGTCTGAAAATCAGTCAGATCTTGCTGCCTTGAATGAAATTCAGTCAAAAGATTCAGATTATCTTTTCACAAATAGCAGTCTCGTGCCAATGCAAAACCTAATGGTAGCCACATCTAGCAATAAGTATCAAGAAAATGCTAATAGTACTTTGCAATCGTTAAAATTATCCGTGGGAAGTGGTAAGGATTCAACATGTGAAACTAGCGCTGACAATAGTACAAACATTGTTGAAGGTGTGCCTAAAAGAGCTTTGGATACCTTAGGGCAGAGAACATCAATATATCGTGGTGTAACAAGACATAGATGGACCGGAAGGTATGAAGCTCACCTTTGGGATAATAGTTGTAGAAGGGAAGGACAATCAAGAAAAGGTCGCCAAGTCTACTTAGGTGGATATGATAAAGAAGATAAAGCAGCTAGGGCTTTTGATTTAGCTGCACTGAAGTTCTGGGGTACATCCACCACTACCAACTTTCCAATCAGCAACTATGAGAAAGAATTGGATGAAATGAAGCACATGACCAGACAAGAATTTGTGGCCGCCATTAGAAGGAAAAGCAGTGGTTTCTCGAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCATCACCAACACGGAAGATGGCAAGCAAGGATTGGTAGAGTCGCAGGAAACAAAGACCTCTACTTGGGAACTTTCAGTACTGAGGAAGAGGCTGCAGAAGCTTACGACATAGCTGCGATAAAATTCAGAGGTCTTAACGCTGTCACTAACTTTGACATGAATCGTTACGATGTGAAAGCCATTCTTGAAAGCAACACTCTCCCAATAGGAGGAGGAGCTGCTAAACGACTAAAGGAAGCTCAAGCTCTTGAGTCTTCGAGGAAGCGTGAAGAGATGAATATTGCACTTGGATCAAGCTTTCAATATGGAACCTCAAGCACAAGGCAACAAGTACAAGCTTACCCTATAATAATGCATCATCAGTTTGAACAATCTCAACCTTTGCTAAATTTACAAAACCATGATATCTCTCAGTGCTCTCAAGACCCTTATATACAAACACAACTTCAGTTGCACCAGCAGAGTGATTCTTCTAATTACGTTCACCAGTCAGCTCAGAATAATGCTCAGTTCTATAACAGTTACTTTCAGAACCACCAAGTTTTGCTTCCGGGAATGATGAACATGGGGTCTTCTTCTTCATCATCTGTGATGGAGAATAACAATGTTGGTGGCGGGTCTAGTGGGAGTTATAGTGGAGGGTTTATGGGGAATAATGGGTTTGGGATTGCTTTGAATTCCTCATCGGGTAACACAGTGGGATCAGCGGAGGAACTTGGGTTGTTTAAGGTTGATTATGACATGCCTTCCGGTGGTTATGGTGGCTGGTCGGCGGCGGAGTCCATGCAGACGTCAAATGCTGGCGTGTTTACTATGTGGAATGACTGA 1641 0.4217 MNNNWLSFPLSPTHSSLPAHDIQAIPYHQFSLGLVNENIENPFQNHDWNLINTPSNNEVPKVADFLGVSKSENQSDLAALNEIQSKDSDYLFTNSSLVPMQNLMVATSSNKYQENANSTLQSLKLSVGSGKDSTCETSADNSTNIVEGVPKRALDTLGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAFDLAALKFWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMNIALGSSFQYGTSSTRQQVQAYPIIMHHQFEQSQPLLNLQNHDISQCSQDPYIQTQLQLHQQSDSSNYVHQSAQNNAQFYNSYFQNHQVLLPGMMNMGSSSSSSVMENNNVGGGSSGSYSGGFMGNNGFGIALNSSSGNTVGSAEELGLFKVDYDMPSGGYGGWSAAESMQTSNAGVFTMWND 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1342g00012 546 ProSiteProfiles AP2/ERF domain profile. 265 323 IPR001471 GO:0003700|GO:0006355
Gabi1342g00012 546 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Gabi1342g00012 546 PRINTS Ethylene responsive element binding protein signature 305 325 IPR001471 GO:0003700|GO:0006355
Gabi1342g00012 546 ProSiteProfiles AP2/ERF domain profile. 163 229 IPR001471 GO:0003700|GO:0006355
Gabi1342g00012 546 Gene3D AP2/ERF domain 163 231 IPR036955 GO:0003700|GO:0006355
Gabi1342g00012 546 Gene3D AP2/ERF domain 265 325 IPR036955 GO:0003700|GO:0006355
Gabi1342g00012 546 CDD AP2 162 231 IPR001471 GO:0003700|GO:0006355
Gabi1342g00012 546 SUPERFAMILY DNA-binding domain 162 231 IPR016177 GO:0003677
Gabi1342g00012 546 SUPERFAMILY DNA-binding domain 264 324 IPR016177 GO:0003677
Gabi1342g00012 546 Pfam AP2 domain 163 221 IPR001471 GO:0003700|GO:0006355
Gabi1342g00012 546 Pfam AP2 domain 266 315 IPR001471 GO:0003700|GO:0006355
Gabi1342g00012 546 SMART rav1_2 163 235 IPR001471 GO:0003700|GO:0006355
Gabi1342g00012 546 SMART rav1_2 265 329 IPR001471 GO:0003700|GO:0006355
Gabi1342g00012 546 CDD AP2 264 323 IPR001471 GO:0003700|GO:0006355
Gabi1342g00012 546 FunFam AP2-like ethylene-responsive transcription factor ANT 162 231 - -
Gabi1342g00012 546 FunFam AP2-like ethylene-responsive transcription factor 264 325 - -
Gabi1342g00012 546 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 62 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1342g00012 Gabi-Chr1342 170956 173951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1342g00012 3 546 AP2-EREBP Transcription Factor Family AT1G51190 62.669 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi1342g00012 AP2 3.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1342g00012 K09285 - gmx:100788471 858.981