Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1342g00006 ATGAGTTGGAACCCACACATGGATGTCCATTACAATAACATCAGCTATCCCTACAATACAGCAGGAAGCTTTATTGAATATTTTGAAGGTCTCACCTACGAACATGTCAACTTCATTTTTTCCGGTGCATCACATGCTCAGGAGAGTTCATACCCTTCAAATTCAAGCTTTTACAAGTTTGGACTCTCTGAACCTGAGAGTACTTCATACTATCGTTACAGTCATGGTTATGAGGTAAATCATCATGAACCACTGGTAGATGAATATAGGAGGCCTTCAGAAAACTCATCGACAATCAACGAACAGACGGCAGCAGTAAGTACAGAATGGGGAGAAGGAGGAAACACTGCCACACAAGAGAATTCTATTGAATGTCCACGAAGACATCATAGTAATTCCAATGATTATCAGGTCATTTGGCAAGACAATATTGATCCCGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAGGCTGTTGGAACTCAAAGCCGTGGTCTCACCCAAGAACAGATCTCCTTGCTTCCAGTTTCAAAGTACAAGGGTGGTTTCTTCTTGAGGAAGAAGTCACGGGATGAGAGATGTGTGATTTGCCAGATGGAATATAAAAGGGGGGACAAGCGGATCACTTTGCCATGTAAACATGTCTATCATGCCAGTTGTGGGAACAGATGGCTTAGCATCAATAAGGCTTGCCCTATATGTTACACGGAGGTGTTTGCCGACAAGTCAAAACATAAATAA 747 0.4203 MSWNPHMDVHYNNISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQESSYPSNSSFYKFGLSEPESTSYYRYSHGYEVNHHEPLVDEYRRPSENSSTINEQTAAVSTEWGEGGNTATQENSIECPRRHHSNSNDYQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISLLPVSKYKGGFFLRKKSRDERCVICQMEYKRGDKRITLPCKHVYHASCGNRWLSINKACPICYTEVFADKSKHK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1342g00006 248 SMART ring_2 196 236 IPR001841 -
Gabi1342g00006 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 242 IPR013083 -
Gabi1342g00006 248 ProSiteProfiles Zinc finger RING-type profile. 196 236 IPR001841 -
Gabi1342g00006 248 Pfam Ring finger domain 195 236 IPR001841 -
Gabi1342g00006 248 FunFam E3 ubiquitin ligase BIG BROTHER 158 241 - -
Gabi1342g00006 248 SUPERFAMILY RING/U-box 189 243 - -
Gabi1342g00006 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 242 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1342g00006 Gabi-Chr1342 91742 99933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1342g00006 5 247 C3H Transcription Factor Family AT3G63530 42.570 4.08e-64 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1342g00006 K19045 - gmx:100805963 499.975