Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1341g00006 ATGGCCCAAATCAATTTCATTCCAGGGTTTCGGTTTCATCCCACTGATGTTGAGCTGGTTATGTACTTTCTGAAGAGAAAGATATTGGGGAAAAAATTCCCTGTCGATGTTATTGCTGAACTTGACATATACAAGTATGCTCCGTGGGATCTTCCAGATAAGTCTTTGCTGAGGAATGGTGATTTAGAATGGTACTTCTTTTGCCCTCGAGGAAGGAAATATTCCACTGGAGGGAGGATGAATCGGGCAACTGAAGATGGGTACTGGAAGACTACTGGGAAGGATAGATCAATCGAACACGAGAATCAAGTTGTGGCCATGATAAAAACCCTGGTGTTTCATAGGGGCCGACCACCTAAGGGAGACCGAACTGATTGGGTTATGCATGAATTCAGACTTGAAGACAAGGACCTGACTGACAAAGGCATTCCACAGCAGGACTCGTATGTGATTTGTAAGGTATTCCAAAAGGAAGGTCCTGGTCCCAGGAATGGTGCACAATATGGAAAACCATTTAATGAGGAAGACTGGGATAAAGAGGAAATATCTGTCTCTGTTCCTGCTATGTCTGCACAAGTTCCCATTCAACCTAGCACAAGTCATATTTCTGTTGAAAAACACATGCATTCCTCTACAACTGGATGCATTGGATTGACCTCTGTATCAAGTCCATCAGGACTTTCCTCTTACTTGACACATCCTTCAGCTCCAAGTAATCAAGTTGATGATGACATTTTACGTATGCTTGATTATTTCAAAGAAGATGATTACACATTGCCTGTGAATGAAAACAACGGAATTGAGGTGATTAATAATTCTGGTCAGGCAAACAATGCTGAAGCCGCACCTTATTTAGATCAAAGTGGCTTTTTTGATGATTTAGGAGACCTTGACTGCTTGCTTGGATGTGATGAAGAAGGTGGTTTTTTCTGTGGCCAGAAAGATGAATGTCCTACAAACGAAGATGACTTGGGGCCTTTCGACCCCCCAAACTTCTTGGAATTGACTGACTTAGTGGCGCCATTGTTATGGAAGACTCAACAAAATGGAAGTCGGAGCCAAGATAAGAAAGCTTAG 1077 0.4243 MAQINFIPGFRFHPTDVELVMYFLKRKILGKKFPVDVIAELDIYKYAPWDLPDKSLLRNGDLEWYFFCPRGRKYSTGGRMNRATEDGYWKTTGKDRSIEHENQVVAMIKTLVFHRGRPPKGDRTDWVMHEFRLEDKDLTDKGIPQQDSYVICKVFQKEGPGPRNGAQYGKPFNEEDWDKEEISVSVPAMSAQVPIQPSTSHISVEKHMHSSTTGCIGLTSVSSPSGLSSYLTHPSAPSNQVDDDILRMLDYFKEDDYTLPVNENNGIEVINNSGQANNAEAAPYLDQSGFFDDLGDLDCLLGCDEEGGFFCGQKDECPTNEDDLGPFDPPNFLELTDLVAPLLWKTQQNGSRSQDKKA 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1341g00006 358 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 220 - -
Gabi1341g00006 358 FunFam Nac domain-containing protein 86 15 160 - -
Gabi1341g00006 358 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Gabi1341g00006 358 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Gabi1341g00006 358 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Gabi1341g00006 358 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1341g00006 Gabi-Chr1341 112053 116854 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1341g00006 1 342 NAC Transcription Factor Family AT5G09330 44.932 1.90e-92 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1341g00006 NAM 2.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1341g00006 - - adu:107470479 417.927