LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1341g00001	ATGCCCACGTGGTGGGGTAGAAAATCAAGCAAGAGCAAGCAGGAGGAGGAGCAGCCACATGGCGGCGGCGGAGGCGGCGGCGGCGTCCTTAATTTCAATTTCATCAAATCTCCGATCAGGAACGCTGCTCCCAAGAAAGGTAAGAAGCCCGAAAAGAAGAAGCCCAACAGCTTTGATGATTTCACTTCTCCCGCTGCTGCCGGCGGCGGCGGGGGGAGCGGAGGCGGCTGCGGCGGCCGCTCTTCCTCTGGATTCTCTTATTGTGATTCCGATGGCGGCGAGAAGAGAGGGCTTCCCTTGCCTCGTCCCTCTGTTTCCTCAACCCAAAGCTTCAGCAACGATCAGGGGCTTGCCTTGGGATCTGCTTCCATATCTGGTTCTAGCGTCAGCTCCACTGGCTCCTGCGATGATCATCCAATTTGTCACTCTCAGATTAATGGGGCCAGAGGACAAGTCAACGTGAGGTCAAAAAGCCCAGGTCCTGGGTCAAGAGGGCCCACCAGCCCTACATCACCTCTTCATCCAAGGTTGCATGTTTTGAGTCTTGACTCCCCTACAGGCAGGCAAGAAGATGGAAGGAGTCAATGTCATCCATTGCCTCGTCCTCCAGGCTCTCCTACTAGTCCTTCTCTTTCCAACACAAGGGCGAATGGACTGCTAGAAAACACTACCAGTAACCCTTCCAAATGGAAGAAAGGAAAGCTTCTAGGACGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAGTGATAGTGGACATTTGTGTGCAATAAAAGAAGTCAGGGTTGTCTCTGATGATCAAACATCAAAAGAGTGCCTCAAACAACTAAATCAGGAAATAAGTTTACTTAGCCAGCTCTCACATCCAAACATTGTTCAATACTATGAAAGTGATTTGGGAGAAGAAGCACTTTCCGTTTATCTGGAATATGTCTCTGGTGGTTCAATTCATAAATTACTTCAGCAATATGGAGCCTTCAAGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTGCCTATCTTCATGGGAGAAACACAGTACATCGGGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCTGGCGGACTTCGGCATGGCTAAACATATAAATGCTTCTTCCTCGATGCTTTCTTTCAAAGGAAGTCCATACTGGATGGCACCTGAGGTTGTTATGAATACAAACGGCTACAGTCTTCCTGTTGATATATGGAGCTTGGGATGCACAATTCTTGAAATGGCAATATCAAAGCCTCCTTGGAGTCAGTATGAAGGGGTAGCTGCAATATTTAAAATTGGTAACAGCAAAGACATGCCTGAAATTCCTGATAATCTCTCAAATGATGCAAAGAATTTCATTAAGCTTTGCTTACAAAGAGATCCATCAGCTCGCCCAACTGCCCAAATGTTACTAGATCACCCCTTTATTCGAGATCAGTCAGCAACAAAAGCTGCAAATGTCAGAATAACCAGGGATGCCTTCCCCTACATGTTTGATGGAAGCCGGACACCGCCAGTTTTAGATCATCATTCCAATAGAACAAGCATAACTTCACTGGATGGAGATTATGCAACAAAGCCAACTCATGCCGCTACACGAGCAGTTAGGAGTCCAAGAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCATTACGACAATACGGGCCAGCACACAAGAGCTGTTTCCTTTCTCCTCCTCATTCAACTTACACAATGATGGGACAAAATACCCTCTCTTCATATCCAGTGAGATCAAATGCCACATTCACTCTTGATCCTTGGCATGAAACATCTTTATACAAAGTCCACACACCCGGGGGATCCCCAAGAACAAGACTCATTTGA	1893	0.4649	MPTWWGRKSSKSKQEEEQPHGGGGGGGGVLNFNFIKSPIRNAAPKKGKKPEKKKPNSFDDFTSPAAAGGGGGSGGGCGGRSSSGFSYCDSDGGEKRGLPLPRPSVSSTQSFSNDQGLALGSASISGSSVSSTGSCDDHPICHSQINGARGQVNVRSKSPGPGSRGPTSPTSPLHPRLHVLSLDSPTGRQEDGRSQCHPLPRPPGSPTSPSLSNTRANGLLENTTSNPSKWKKGKLLGRGTFGHVYLGFNSDSGHLCAIKEVRVVSDDQTSKECLKQLNQEISLLSQLSHPNIVQYYESDLGEEALSVYLEYVSGGSIHKLLQQYGAFKEPVIQNYTRQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINASSSMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTILEMAISKPPWSQYEGVAAIFKIGNSKDMPEIPDNLSNDAKNFIKLCLQRDPSARPTAQMLLDHPFIRDQSATKAANVRITRDAFPYMFDGSRTPPVLDHHSNRTSITSLDGDYATKPTHAATRAVRSPRDNTRMITSLPVSPCSSPLRQYGPAHKSCFLSPPHSTYTMMGQNTLSSYPVRSNATFTLDPWHETSLYKVHTPGGSPRTRLI	630

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1341g00001	630	SMART	serkin_6	230	486	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1341g00001	630	ProSitePatterns	Protein kinases ATP-binding region signature.	236	259	IPR017441	GO:0005524
	Gabi1341g00001	630	ProSiteProfiles	Protein kinase domain profile.	230	486	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1341g00001	630	Pfam	Protein kinase domain	231	486	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1341g00001	630	MobiDBLite	consensus disorder prediction	146	170	-	-
	Gabi1341g00001	630	SUPERFAMILY	Protein kinase-like (PK-like)	228	558	IPR011009	-
	Gabi1341g00001	630	MobiDBLite	consensus disorder prediction	102	139	-	-
	Gabi1341g00001	630	CDD	STKc_MEKK1_plant	229	486	-	-
	Gabi1341g00001	630	MobiDBLite	consensus disorder prediction	1	233	-	-
	Gabi1341g00001	630	FunFam	Mitogen-activated protein kinase kinase kinase	228	510	-	-
	Gabi1341g00001	630	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	106	494	-	-
	Gabi1341g00001	630	Gene3D	Transferase(Phosphotransferase) domain 1	227	506	-	-
	Gabi1341g00001	630	MobiDBLite	consensus disorder prediction	208	230	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1341g00001	Gabi-Chr1341	10416	17482	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1341g00001	1	549	MAP Kinase Kinase Kinase	AT1G53570	57.270	0.0	540

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Gabi1341g00001		Pkinase	5.4e-74	CL0016