Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi133g00002 ATGGAGCTAGGCTTGAGCTTAGGAGACACTTCAAGGCCTTTCGTGTTCATAGAAAGGCCTTGTAAAGCTTCAAACGAATTGGGGCTAGGCTTCAACACCACCTTATCAATTGGTCAAGTTATTACTAAACAAAGAGATCATCAACATCAAGAACAAGATGAAACAACTGCAAAGCAAAATAACAAACACAATAGTCACAGCACTGATCAAGAAGGCCATGAAGCCACAAATGAATACCTTACTCCTTCTCTCAAAGCCAATAACAACGCAGTTCTACCGCTTGATCTTCTTCCTCACACACCGGCTGTTGCTCCTATCAACCATCCTCCACACCTTTCCATCTCAAACGCAAGGGGCTTAGATATTAACCGGGTGCCGACTGTGGCGGCGGTGGAAGTGGACGATGAGGCGGAGGAAGAGGTGGTGTTGTCATCATCCCCCAACAGTGCAGCATCATCAATTCAGATGGATCTCTGCATATTCAGCAGAGGAAGGAGTATGAGTGGTGAAGGTTATGATCAAAGGGGAAGTTCCAAAGCAAGTGATGAAGATGAGAACGGTGGCAGCACCAGAAAAAAGCTTAGGCTCTCTAAGGAACAATCTGCTTTCCTTGAAGAGAACTTCAAAGAACACAACACTCTTAACCCAAAACAAAAGCTTGCTCTTGCGAAACAACTCCATCTTCGCCCTCGCCAAGTAGAAGTATGGTTTCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAGACAGAGGTGGATTGCGAGTACTTGAAGAGGTGTTGTGACACACTTAGAGAAGAGAATAGAAGGATTCACAAGGAGATTCAAGAATTGAGGGCTTTGAAGACTTCAAACCCATTCTATATGCAGTTACCACCAACCACCTTGACCATGTGCCCATCATGTGAGCGTGTTGCCACTAATTGCACTGCCAAAACCACTAATGAATCAACCTCCAAAACCATTGGATTCCCTGTTGGCAAACCCAGGTTTTATCCATTTTCTCACACCCAACCACATACCCACCCCACCAGTCCACAGCATCTTGAATTAAATTAA 1056 0.4479 MELGLSLGDTSRPFVFIERPCKASNELGLGFNTTLSIGQVITKQRDHQHQEQDETTAKQNNKHNSHSTDQEGHEATNEYLTPSLKANNNAVLPLDLLPHTPAVAPINHPPHLSISNARGLDINRVPTVAAVEVDDEAEEEVVLSSSPNSAASSIQMDLCIFSRGRSMSGEGYDQRGSSKASDEDENGGSTRKKLRLSKEQSAFLEENFKEHNTLNPKQKLALAKQLHLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDTLREENRRIHKEIQELRALKTSNPFYMQLPPTTLTMCPSCERVATNCTAKTTNESTSKTIGFPVGKPRFYPFSHTQPHTHPTSPQHLELN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi133g00002 351 FunFam Homeobox-leucine zipper protein 18 176 252 - -
Gabi133g00002 351 Coils Coil 260 283 - -
Gabi133g00002 351 SUPERFAMILY Homeodomain-like 180 248 IPR009057 -
Gabi133g00002 351 SMART HOX_1 189 251 IPR001356 GO:0003677
Gabi133g00002 351 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 56 319 - -
Gabi133g00002 351 ProSiteProfiles 'Homeobox' domain profile. 187 247 IPR001356 GO:0003677
Gabi133g00002 351 Pfam Homeobox associated leucine zipper 247 281 IPR003106 GO:0006355|GO:0043565
Gabi133g00002 351 ProSitePatterns 'Homeobox' domain signature. 222 245 IPR017970 GO:0000981|GO:0006355
Gabi133g00002 351 SMART halz 247 290 IPR003106 GO:0006355|GO:0043565
Gabi133g00002 351 MobiDBLite consensus disorder prediction 331 351 - -
Gabi133g00002 351 MobiDBLite consensus disorder prediction 176 195 - -
Gabi133g00002 351 MobiDBLite consensus disorder prediction 44 73 - -
Gabi133g00002 351 MobiDBLite consensus disorder prediction 42 75 - -
Gabi133g00002 351 Pfam Homeodomain 191 245 IPR001356 GO:0003677
Gabi133g00002 351 MobiDBLite consensus disorder prediction 168 195 - -
Gabi133g00002 351 CDD homeodomain 191 248 IPR001356 GO:0003677
Gabi133g00002 351 Gene3D - 195 245 - -
Gabi133g00002 351 MobiDBLite consensus disorder prediction 336 351 - -
Gabi133g00002 351 Pfam HD-ZIP protein N terminus 77 154 IPR006712 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi133g00002 Gabi-Chr133 69559 72383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi133g00002 178 344 Homeobox Transcription Factor Family AT4G37790 62.791 1.86e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi133g00002 HD-ZIP_N 0.00012 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi133g00002 K09338 - gmx:100778742 389.037