Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1339g00026 ATGGAGAACACTGTAACTGTAAACCCTAGCGATGGAGAACGACGAAAGGTGGTGGTTATAACGGGCCCCACAGGTTCCGGGAAGTCGAAGCTTGCCGTTGATTTGGCCTCTCACTTCCCCGTCGAAGTGATCAACGCCGATTCCATGCAGGTCTACCGTGGACTCGATGTTCTCACCAACAAACTCACACTCTCCCAACAAAACGGAGTGCCACATCATCTCTTGGGTACCGTAAACCCAAACTTGGAATTCACAGCTAAAATGTTTCGGGATTCTGCTATTCCCATCATCCATGATATATTAGCTCGCAAGCACTTGCCTGTTATAGTTGGGGGTACTAATTACTATATTCAGGCTCTTGTGAGTCCGTTTCTTTTAGATGACTCGGCAGAAGATATGACTGAAAACTGTTCGGGTATCAAACAGTCTGATAATAGTTTCATTGATGAAAATGATAGTTCAAACGATAGTTATGACCTGCTTAAAGATATTGATCCAGTTGCAGCAAATAGAATCCATCCAAATAATCATAGAAAGATAAATCAATATATTAGTTTGTATGCTCGCACTGGTGTTCTTCCTAGCAAAGTTTTTCAAGGAAAGGCAGCGGAGAAGTGGGGTCAAGTTGATAACTTAAGATATGATTGCTGTTTTATATGTGTGGATGCATCTCTCCCTGTGCTGGACAGATATGTAGAGCGGAGGGTAGATTGTATGATGGATGCTGGGTTACTCAATGAAGTCTATGACATTTACAATTTGAACGCAGATTATACTAGAGGTTTATGTCAGGCCATTGGTGTCCGTGAATTTGAGCCTCTTCTTAGAACTTGTGTTGTGGAAGACATCTATAGAAGAGAGAAGGAATTGACTGAGGGATCCAGCATAGAAAAGGATGAGACATTGTTTTATGGTAATCTGATGGAGTGGTTGAGATCTTCATCTGATACTAAATCCATAATTCTTTTGGAAGAAGCAATTGAAAAAGTAAAGGTTAATACTCGGAGGCTTGTTCGCCGTCAGAAGAGGATGCTCAGTCGACTACAAACACTGTTTGGTTGGAAAATACACTATGTTGATTCCACGGAATCAATATCAAGCAAGTCAGATGATGTATGGACTGGCCAAGTGGTTGAATCTGCCATGAAGATAGTTAGATCTTTCTTGAGCGAGAATGGAAGCTTGTCATCCACCTCTGGGATGTCAAATGACACTGAGATGAAAATAATTCAAAGGGACCTCTGGACTCAATACATATGCAAGGCCTGCGGAGATCGGGTGCTTAGAGGATTACATGAATGGGAACAACACAGGCAAGGTCGTGGACACCGAAAACGTATTTCTCGTCTCAAGAGCAAGGTTCAAGGTCTTAGCTTCGTGGAACAAAAGCTGGAGTATTCTGAATGCGAATAG 1413 0.4225 MENTVTVNPSDGERRKVVVITGPTGSGKSKLAVDLASHFPVEVINADSMQVYRGLDVLTNKLTLSQQNGVPHHLLGTVNPNLEFTAKMFRDSAIPIIHDILARKHLPVIVGGTNYYIQALVSPFLLDDSAEDMTENCSGIKQSDNSFIDENDSSNDSYDLLKDIDPVAANRIHPNNHRKINQYISLYARTGVLPSKVFQGKAAEKWGQVDNLRYDCCFICVDASLPVLDRYVERRVDCMMDAGLLNEVYDIYNLNADYTRGLCQAIGVREFEPLLRTCVVEDIYRREKELTEGSSIEKDETLFYGNLMEWLRSSSDTKSIILLEEAIEKVKVNTRRLVRRQKRMLSRLQTLFGWKIHYVDSTESISSKSDDVWTGQVVESAMKIVRSFLSENGSLSSTSGMSNDTEMKIIQRDLWTQYICKACGDRVLRGLHEWEQHRQGRGHRKRISRLKSKVQGLSFVEQKLEYSECE 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1339g00026 470 Gene3D Classic Zinc Finger 415 456 - -
Gabi1339g00026 470 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 15 389 IPR039657 -
Gabi1339g00026 470 FunFam LD10347p 146 202 - -
Gabi1339g00026 470 FunFam tRNA dimethylallyltransferase 413 455 - -
Gabi1339g00026 470 Pfam IPP transferase 50 343 - -
Gabi1339g00026 470 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 17 279 IPR018022 GO:0008033
Gabi1339g00026 470 Hamap tRNA dimethylallyltransferase [miaA]. 17 390 IPR018022 GO:0008033
Gabi1339g00026 470 Gene3D - 138 201 - -
Gabi1339g00026 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 255 IPR027417 -
Gabi1339g00026 470 Gene3D - 14 414 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1339g00026 Gabi-Chr1339 132562 136353 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1339g00026 5 452 C2H2 Transcription Factor Family AT2G27760 57.267 3.30e-179 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1339g00026 K00791 - gmx:100792690 766.533