Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1339g00025 ATGGAGAACACTGTAACTGTAAACCCTAGCGATGGAGAACGACGAAAGGTGGTGGTTATAACGGGCCCCACAGGTTCCGGGAAGTCGAAGCTTGCCGTTGATTTGGCCTCTCACTTCCCCGTCGAAGTGATCAACGCCGATTCCATGCAGGTCTACCGTGGACTCGATGTTCTCACCAACAAACTCACACTCTCCCAACAAAACGGAGTGCCACATCATCTCTTGGGTACCGTAAACCCAAACTTGGAATTCACAGCTAAAATGTTTCGGGATTCTGCTATTCCCATCATCCATGATATATTAGCTCGCAAGCACTTGCCTGTTATAGTTGGGGGTACTAATTACTATATTCAGGCTCTTGTGAGTCCGTTTCTTTTAGATGACTCGGCAGAAGATATGACTGAAAACTGTTCGGGTGATTCGCCTGGTAACTTGATATCCGTGCTCTATTCTTTTCCTGTTCTATTAAAGTGTACTTATATCTATTTTATTTGTAATTTTGTAGGTATCAAACAGTCTGATAATAGTTTCATTGATGAAAATGATAGTTCAAACGATAGTTATGACCTGCTTAAAGATATTGATCCAGTTGCAGCAAATAGAATCCATCCAAATAATCATAGAAAGATAAATCAATATATTAGTTTGTATGCTCGCACTGGTGTTCTTCCTAGCAAAGTTTTTCAAGGAAAGGCAGCGGAGAAGTGGGGTCAAGTTGATAACTTAAGATATGATTGCTGTTTTATATGTGTGGATGCATCTCTCCCTGTGCTGGACAGATATGTAGAGCGGAGGGTAGATTGTATGATGGATGCTGGGTTACTCAATGAAGTCTATGACATTTACAATTTGAACGCAGATTATACTAGAGGTTTATGTCAGGCCATTGGTGTCCGTGAATTTGAGCCTCTTCTTAGAACTTGTGTTGTGGAAGACATCTATAGAAGAGAGAAGGAATTGACTGAGGGATCCAGCATAGAAAAGGATGAGACATTGTTTTATGGTAATCTGATGGAGTGGTTGAGATCTTCATCTGATACTAAATCCATAATTCTTTTGGAAGAAGCAATTGAAAAAGTAAAGGTTAATACTCGGAGGCTTGTTCGCCGTCAGAAGAGGATGCTCAGTCGACTACAAACACTGTTTGGTTGGAAAATACACTATGTTGATTCCACGGAATCAATATCAAGCAAGTCAGATGATGTATGGACTGGCCAAGTGGTTGAATCTGCCATGAAGATAGTTAGATCTTTCTTGAGCGAGAATGGAAGCTTGTCATCCACCTCTGGGATGTCAAATGACACTGAGATGAAAATAATTCAAAGGGACCTCTGGACTCAATACATATGCAAGGCCTGCGGAGATCGGGTGCTTAGAGGATTACATGAATGGGAACAACACAGGCAAGGTCGTGGACACCGAAAACGTATTTCTCGTCTCAAGAGCAAGGTTCAAGGTCTTAGCTTCGTGGAACAAAAGCTGGAGTATTCTGAATGCGAATAG 1503 0.4158 MENTVTVNPSDGERRKVVVITGPTGSGKSKLAVDLASHFPVEVINADSMQVYRGLDVLTNKLTLSQQNGVPHHLLGTVNPNLEFTAKMFRDSAIPIIHDILARKHLPVIVGGTNYYIQALVSPFLLDDSAEDMTENCSGDSPGNLISVLYSFPVLLKCTYIYFICNFVGIKQSDNSFIDENDSSNDSYDLLKDIDPVAANRIHPNNHRKINQYISLYARTGVLPSKVFQGKAAEKWGQVDNLRYDCCFICVDASLPVLDRYVERRVDCMMDAGLLNEVYDIYNLNADYTRGLCQAIGVREFEPLLRTCVVEDIYRREKELTEGSSIEKDETLFYGNLMEWLRSSSDTKSIILLEEAIEKVKVNTRRLVRRQKRMLSRLQTLFGWKIHYVDSTESISSKSDDVWTGQVVESAMKIVRSFLSENGSLSSTSGMSNDTEMKIIQRDLWTQYICKACGDRVLRGLHEWEQHRQGRGHRKRISRLKSKVQGLSFVEQKLEYSECE 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1339g00025 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 284 IPR027417 -
Gabi1339g00025 500 Gene3D Classic Zinc Finger 445 486 - -
Gabi1339g00025 500 Gene3D - 170 231 - -
Gabi1339g00025 500 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 15 419 IPR039657 -
Gabi1339g00025 500 Hamap tRNA dimethylallyltransferase [miaA]. 17 420 IPR018022 GO:0008033
Gabi1339g00025 500 Gene3D - 14 444 IPR027417 -
Gabi1339g00025 500 FunFam tRNA dimethylallyltransferase 443 485 - -
Gabi1339g00025 500 Pfam IPP transferase 50 373 - -
Gabi1339g00025 500 FunFam LD10347p 176 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1339g00025 Gabi-Chr1339 132562 136353 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1339g00025 5 482 C2H2 Transcription Factor Family AT2G27760 54.938 4.61e-175 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1339g00025 K00791 - gmx:100792690 761.525