Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1339g00017 ATGAGGACACTGTACACTGAAGGAATGAACGTTATTAATTTACGATTTTGCCACTCTTCTCAATTCCTCTTCCTAAACCTAAAGGTTCCGTTCCTTGTTCCTTCTTCGCAAATTGGAAAATTAACTCTAAGAAACCACATTCCTTCTTCCATTTCCTTCAAAAACCGTGTAATTTCTCCGATTCAAGCATCTATGGCCTCATCCACTGTCACAGAAACGGAGACAAAGCCATTCTCGGTGCTCTTTGTGTGCCTTGGCAACATTTGTAGGAGCCCAGCTGCTGAAGGGGTCTTCACAGACTTGGTCAAGAAAAGGGGTTTGGATTCCAACTTCAAAATCGATTCTTGTGGCACCATCAATTATCATGAGGGAAATGAAGCAGACCCGAGAATGAGGGCAGCCTCAAAAAGGCGTGGGATTCAGATAACTTCTATTTCGAGGCCACTTAAGCCCTCTGATTTCATTGACTTTGATCTCATTCTTGCTATGGACAAGCAAAATAGAGAGGACATATTGGAGGCCTTCAATAGATGGAAATTTAGACAGACTTTACCAGAAGATGCACATAAAAAGGTTAAGTTGATGTGCTCATATTGTAAGAAGCATGATGAAACTGAAGTCCCAGATCCTTACTATGGTGGACCGCAAGGTTTTGAGAAGGTGTTAGATTTGCTTGAAGATGCTTGCGAATCATTGCTAGAAAACATTTTGGCTGAAAATAAACATATTCAAGAATCCTAA 741 0.4089 MRTLYTEGMNVINLRFCHSSQFLFLNLKVPFLVPSSQIGKLTLRNHIPSSISFKNRVISPIQASMASSTVTETETKPFSVLFVCLGNICRSPAAEGVFTDLVKKRGLDSNFKIDSCGTINYHEGNEADPRMRAASKRRGIQITSISRPLKPSDFIDFDLILAMDKQNREDILEAFNRWKFRQTLPEDAHKKVKLMCSYCKKHDETEVPDPYYGGPQGFEKVLDLLEDACESLLENILAENKHIQES 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1339g00017 246 CDD LMWPTP 79 234 - -
Gabi1339g00017 246 FunFam Low molecular weight protein-tyrosine-phosphatase 77 241 - -
Gabi1339g00017 246 PRINTS LMW phosphotyrosine protein phosphatase signature 207 222 IPR017867 GO:0004725|GO:0006470
Gabi1339g00017 246 PRINTS LMW phosphotyrosine protein phosphatase signature 123 139 IPR017867 GO:0004725|GO:0006470
Gabi1339g00017 246 PRINTS LMW phosphotyrosine protein phosphatase signature 80 97 IPR017867 GO:0004725|GO:0006470
Gabi1339g00017 246 Pfam Low molecular weight phosphotyrosine protein phosphatase 80 233 IPR023485 -
Gabi1339g00017 246 SMART LMWPc_2 78 235 IPR023485 -
Gabi1339g00017 246 SUPERFAMILY Phosphotyrosine protein phosphatases I 76 236 IPR036196 -
Gabi1339g00017 246 Gene3D - 61 241 - -
Gabi1339g00017 246 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 13 241 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1339g00017 61 240 Protein tyrosine phosphatase (PTP) family AT3G44620 65.686 3.61e-92 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1339g00017 K25307 - gmx:100797254 374.785