Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1339g00016 ATGGAACCATGCGTGGAGGATCTAGCCGACGACCTCCATAGCCTAAGCTTCGCTTCCACCACTACCACCGTAGATATCAAACGCAGCACTAGCTTCAGCTCCGAAACCACCACCGTAACACCATCCACTTCAGCTCACTTCCATCCACCACTCCCATCCACCACCACCAAACCCCACGCGCCCTCTTCCGACCCTTGCTGGACCTTCATCCACCGGATCCGATCCGAATCCCCGACCCGTACCATCTCCCCTTCGGACTTTCGACTCACCCGTCGCCTCGGCTCCGGCGACATAAGCTCCGTCTACCTAGCGGAGCCGAAGCAACCCACCGAGGGCTCCGCCGCGTTGTTCGCCGCTAAGGTGATGAACAAAGAGGAGCTGGCGAGCCGGAGCAAGGAAGGGAGGGCGAGGACAGAGAGGGAAATTCTGGAAATGTTGGACCACCCTTTCTTGCCCACTCTCTACGCGTGCATTGACTCGCCCAAATGGCTCTGCCTCTTGACGCCGTTCTGCCCCGGCGGTGACTTGCACGTGCTCCGCCAACGCCGCCCCAACAAACGCTTCCACGAATCCGCCGTCAGGTTCTACGCATCAGAGGTCTTGGTGGCACTTGAATACCTACACATGTTGGGGGTAGTCTACCGTGATCTCAAGCCAGAAAACGTGTTGGTTCGATCTGACGGCCACATCATGCTCACTGACTTTGACCTCTCGTTGAAATGTAACAAGTCCAAATCAACGGCTCAGATCATCTCTGATCAAAGCCCTCCTCTCACTGTCCCACATTACGATTCTCACGTTGAACCCTCTCATGTTATCCCCTCTTCTTGCATGTTACCTAACTGTATAGTCCCCGCCATGTCGTGTTTCCACCCAAAACGCAAGCGAAAGAATAAGCAGAGCCTGCGTAGCGGGCCTGAGTTTGTGGCCGAGCCCATTGATGTCCGGTCCATGTCATTCGTAGGAACCCACGAGTACTTGGCGCCAGAAATCGTCTCCGGGGAGGGCCATGGTAGTGCCGTGGACTGGTGGACTTTAGGGGTATTTATATTTGAACTGTTTTATGGGATAACACCCTTCAGGGGCATGGACCATGAGCTAACCCTAGCTAACATTGTGGCTCGAGCCCTTGAGTTCCCCAAGGAACCCACCGCGCCTGCTGCCATGAAAGACCTTATACAGCAGTTATTAGTTAAGGATCCGGCAAGAAGACTCGGGTCAATGGTGGGGGCTTCCGCAATCAAGCACCACCCATTTTTTCAAGGTGTGAATTGGGCATTGCTAAGGTGTACAACTCCCCCCTTTGTGCCCCCACCTCTCAGTAAAGAAGCTGTATATGATCATCCTGGAAGTCGTCCAGAGACTCCTTTTGAATATTATTAA 1383 0.5409 MEPCVEDLADDLHSLSFASTTTTVDIKRSTSFSSETTTVTPSTSAHFHPPLPSTTTKPHAPSSDPCWTFIHRIRSESPTRTISPSDFRLTRRLGSGDISSVYLAEPKQPTEGSAALFAAKVMNKEELASRSKEGRARTEREILEMLDHPFLPTLYACIDSPKWLCLLTPFCPGGDLHVLRQRRPNKRFHESAVRFYASEVLVALEYLHMLGVVYRDLKPENVLVRSDGHIMLTDFDLSLKCNKSKSTAQIISDQSPPLTVPHYDSHVEPSHVIPSSCMLPNCIVPAMSCFHPKRKRKNKQSLRSGPEFVAEPIDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFIFELFYGITPFRGMDHELTLANIVARALEFPKEPTAPAAMKDLIQQLLVKDPARRLGSMVGASAIKHHPFFQGVNWALLRCTTPPFVPPPLSKEAVYDHPGSRPETPFEYY 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1339g00016 460 ProSiteProfiles Protein kinase domain profile. 87 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1339g00016 460 FunFam serine/threonine-protein kinase D6PK-like 175 242 - -
Gabi1339g00016 460 Gene3D Transferase(Phosphotransferase) domain 1 175 250 - -
Gabi1339g00016 460 Gene3D Transferase(Phosphotransferase) domain 1 316 438 - -
Gabi1339g00016 460 Pfam Protein kinase domain 88 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1339g00016 460 Pfam Protein kinase domain 317 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1339g00016 460 SUPERFAMILY Protein kinase-like (PK-like) 63 447 IPR011009 -
Gabi1339g00016 460 Gene3D Phosphorylase Kinase; domain 1 85 174 - -
Gabi1339g00016 460 PANTHER FLIPPASE KINASE 1-RELATED 31 440 - -
Gabi1339g00016 460 MobiDBLite consensus disorder prediction 29 60 - -
Gabi1339g00016 460 CDD STKc_phototropin_like 85 444 - -
Gabi1339g00016 460 SMART serkin_6 87 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1339g00016 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Gabi1339g00016 460 FunFam serine/threonine-protein kinase D6PK-like 315 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1339g00016 Gabi-Chr1339 91431 95648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1339g00016 1 460 AGC Kinase Gene Family AT3G44610 63.750 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gabi1339g00016 Pkinase 2.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1339g00016 K08286 - cave:132163612 689.493