Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1339g00013 ATGAAGGTGATCGCAGCGTATTTGCTTGCCGTTTTGGGAGGCAACGCAGCTCCTTCAGCTGATGATCTGAAGAATATCCTTGGCTCAGTTGGAGCTGAGGCTGATGACAGTAATATTGAGTTGCTCTTAACTGAAACTAAGGGCAAGGATATTGCTGAGCTGATTGCTAGTGGAAGAGAGAAGTTGGCTTCAGTGCCTTCTGGTGGTGGTGCTGTAGCTGTTGCTGCTGCACCTGCAGGTGCCGCTGCAACTGGAGGTGCAGCACCTGCTGCTGAGGCAAAGGAGGAAAAGAAGGTTGAAGAGAAGGAAGAGTCGGATGACGACATGGGTTTCAGTTTATTCGACTAA 348 0.4971 MKVIAAYLLAVLGGNAAPSADDLKNILGSVGAEADDSNIELLLTETKGKDIAELIASGREKLASVPSGGGAVAVAAAPAGAAATGGAAPAAEAKEEKKVEEKEESDDDMGFSLFD 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1339g00013 115 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
Gabi1339g00013 115 MobiDBLite consensus disorder prediction 83 115 - -
Gabi1339g00013 115 Hamap 50S ribosomal protein L12 [rpl12]. 2 115 IPR027534 GO:0003735|GO:0005840|GO:0006414
Gabi1339g00013 115 MobiDBLite consensus disorder prediction 91 105 - -
Gabi1339g00013 115 Gene3D - 1 59 IPR038716 -
Gabi1339g00013 115 Pfam 60s Acidic ribosomal protein 18 114 - -
Gabi1339g00013 115 FunFam 60S acidic ribosomal protein P2 1 59 - -
Gabi1339g00013 115 CDD Ribosomal_P2 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1339g00013 Gabi-Chr1339 88768 90217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1339g00013 1 115 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 69.565 4.53e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1339g00013 K02943 - qsu:111996733 129.798