Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1338g00005 ATGGCCACGATGCGCAAATTGTCGTTTTGCAAGCCCCCCGATGGCCTTCTCGAGATCTCTGACAGAGTTTATGTTTTTGATTGCTGTTTCGGCATGGAACATGATCGGAATGAACAACATTACAAAGTCTACGTGGATGGGGTGGTTGGTCAATTTCGAAAAAACGTTCCTGACGCTTCAATTTTGGCATGCAATTTCGGTGAGGAAGAGACAAATAGCAAGATGGCCAATGTTTTGTCCTTGCATGATGTTACTCTCATGGACTATCCTCGCCACTACCTAGGTTGCCCCGTGCTAAAAATGGAAACCATGTGCCTCTTTCTAAGGTCGTGTGAAAGTTGGCTCTCTAATCGTCACCACAATGTCTTGTTGATGCATTGTGAGCGTGATGGTTGGCCAGTTTTGGCTTTCATGTTGGCTGCATTGTTGATTTTGATGAAGAAGTGTGATGGTGAACAGAGGACTTTGGATATGGTTTACAAGCAAGCTAAGCGCGAGCTTTTGCATTTGTTGATGCCAGTGAATCCCATCCATTCGCAACTGAGGTATTTGCAGTACGTTTCAGGGAGGAATAGGACCTTAGACTGGCCTCCATTGGACAGGGCTATCAGGTTGGATTGTATCATTGTCAGGTTTATCCCAAACTTTGTTGGTGAAGGTGGTTGTGGTCCGGTGTTTAGAATTTATGGACAGGATCCTTTTCATGCCGATAAGAATCCAAAAATCTTGTACTCAACGCCCAAGATAACCAAAAATGTCCGGGCTTACAATATGGGAGATTGTGAAACAATTAAAGTTGATATCAATTGCCATATTCAAGGTGATGTCCTGATTGAGAGCATTAACTTGAATGGTGACATGGACAGGGAGCACCTGATGTTCCGAGCCATGTTCAACACAGCTTTTATTAGATCTAATTCCCTGGTACTTAATCGGGACAACATTGATGTTTTATGGTATGCTAAAGATTGCTTCCCAAAGGATTTCAGAGCAGAGATTCTTTTCTCCGAGAAGGATGCTGCTGCAGCAGTTCTTGAGAATGGCACATCATGCTTTGGGGAGAACGAAGGATTGCCTGTTGAAGCATTTTCCAAAATTCAAGAGATCTTTAGTTATGCGGACTGGATGAATCCCACCGAAGATCCTGCACTAAAAGTACTCCAACAGAGACGTGATTCATCTATCATACATGACAAGTTGAATACAAGTTCGGATAAGTATGTGGAGAGTGGCACTCTTTTGCATGGCAAAGGTCCTGAACAGCCTCAGGAGAAAAAAAATGAAGCAAATTGTTTCTTGTCTTCAACTAAGCAATCCCCAGATAATGATATGAGTAGAAAAGAGGATAAGATCATCAAGACTGGTTATATTCCACCACAGTATAGGAAGTCTGACATCCTCAGTCAAAAAACGCCTAGCTCTTTAGAAAGAACCTCAGACTCCAGTAATTGTGTAACAGATTCTGCAAATCCTTACAGAAAACAACATTCATATAATTTTGCCTTATCTGGTTCTGTGGATACCTCCTCTAGTGGTTCAATGTCACCACAAACACCTCCACAGCACTCTCCCTTGTCTAGCAGGGCTAAAAAAGTTCATGATTTCCCTCCTTATAAGGAATCAGATCTTAATAGTCTTTTGCCTTTGAAATCAAGACATCCACTTACTGAAGAAACTGAATCTCAATCACAAGACAAATGTCAGTCATTTAATATTAGCTCTACAAATAGGACTCCATCCTCATGTGCTTGTCAAAATAAGTCACCGAATGATGATGTTTCTGATCCTCCGGCTTCTGCAATTAGGTCAACTCAGTCACCTCTTCCATCCCCTCAACTTTCTTCCCCAACACCTCCTTTAAAGAAGATTTTACCTGTTAGGACAAGACCTGATTCGTTCCCTTCAAAACTTCAAACCCCGCCACCTCCACCCACTCCTCCACTAAAGGAACATGTACAAATTAGAGCTGGACCTCAATCCCCACCAACTCCTCCAAAGGATGAAAAACAAATCAGAGCTGGAACCCCTCCTTCACCTCCAACTCCACCACCACCTCCTTGTCTTTCTGGGAAATCTGCAAGTCCTACTATAGCACCCCCGCCTCCGCCACCACCAGCTGTTCCTTCAGCTCCAGCTGCTCCACCACCTCCAACTTACTTTGATAAAGGAGGTGTAAAACCAGACAATGGTTTTCCCACGTCACTTTTGGTTGGTGGTGATGGACATAATGTGTCAGGCACACAAGGACATCGATCTACTTCATCCACTGGCTCAAAGGGACGAATTATATCACATACAAGCTCAAATAGTCAGACCAAAAAGTTGAAGCCATTGCATTGGTTGAAACTATCTAGAGCAGTGCAAGGAAGTTTGTGGGCAGAGGCACAGAAATCTGGTGAAGCTTCCAAAGCCCCGGAGATTGATATGTCAGAGCTTGAGAGTCTCTTCTCAGCTGCAGTCCCAAGAGCAGTCCCTTCCAAGAAGTCAAATGTCCAAAGCTCAGTTGGGCCAAAGTCTGATAAAGTGCAACTGATTGATCATACACGAGCATATAATTGTGAAATCCTTCTTTCAAAAGTGAAAGTGCCCTTACATGAATTCATGAGCTCAGTGCTAGCACTGGAAGAGTCGGCATTAGACACTGATCAGGTTGAGAACCTGATGAAGTTTTGTCCTACGAAAGAGGAGATAGAAGTACTCAAGGGTTATAATGGAGATAAGGAGAAGCTTGGACGATGTGAACAGTTCTTCCTGGAGTTGATGAAAATTCCCCGGGTAGAATCTAAGCTCATGGTTTTCTCATTCAAGATTCAGTTTCACTCTCAGGCTTCTGACCTTAGAGATAGCCTGCATGTTGTTAATGCTGCTTCAGAAGAGATCAGGAACTCTGTCAAATTAAGGAGAATCATGCAAACAATACTTTCTCTAGGAAATGCTTTGAACCAGGGAACTGCCAAGGGTTCTGCTATTGGATTCAGATTGGATACCCTTCTTAAACTCACTGAGACACGTGCACGGAACAACAAGATAACTCTCATGCATTATCTTTGTAAGGTTGTGGCAGATAAACTACCAGAAGTTTTAGACTTCTCCAAGGATCTTGCTAACCTCGAGCCAGCTGCAAAGGTCCAATTGAAGTTTGTGGCAGAGGAGATGCAAGGTATAAACAAAGGATTAGAGAAAGTTGAACATGAACTATCGAACTCTGAAAATGATGGTCCTATATCAGAAACTTTCAGCAAGAATTTGAAAGAGTACCTCTGTTCTGCGAAAGCCGAAGTCAGTTCGTTGGCTTCACTTTACTCTCTTGTGGGTAGGAATGTGGATGCTTTGATTATTTATTTTGGTGAAGATCCATCACGCTGCCCTTTTGAGCAAGTTGTTACAACTTTGCTCAACTTCACTGGAATGTTCAACAAAGCCCATGAAGAAAACTGCAACCAGCTTGAGCTTGAAATGAAGAAAACAGAAGAAAGTGAGAAACAAAAATGTGATTCAGTTTCAGTCAAGGGGTTGTGCATTTTGCTTAGTGGTTTGGTGCAGAATGGTTGGGACGATGGTTCGGAGGATTGGTGTTGGCGTAAGATTTGGAAGTGGCCTGGTACCCTTCGAATGAAAATTCTTCTTTGGAAGTTAGCTTACGGGAGGTTACCTAATAAATTGTGGATTACCTCGTGGTCTAATGGGGATAGCCTCTGCCCAATTTGTAGGAGTGAAGATGAGTCTATTATCCATGTTTTTTTGGACTGTGCAGTTGTCTGCGAATTATGGTGCGAATCCATTCCTCTGATTCACCAGGATGGCTTCTTCACGGTTTGGTGTTGGAGAAATAACGTTGTTCATTTGCAATTGATGGCTCCTTCGCTGCCTCATTCTGCTGGTGTCATTAAGCGCACTCTTGCTTATGTCTTAGGGTCTTTTTCCCCTTCCATCTCTCATCCAGTGGCGTATTTGCTAACAAAAAGGGCTACAATCGCTATTTCAGCTACGAAAGCTCAATTCAGACGGGAAGATGGTCGCAATCTGAGCCCAAGATGA 4038 0.4309 MATMRKLSFCKPPDGLLEISDRVYVFDCCFGMEHDRNEQHYKVYVDGVVGQFRKNVPDASILACNFGEEETNSKMANVLSLHDVTLMDYPRHYLGCPVLKMETMCLFLRSCESWLSNRHHNVLLMHCERDGWPVLAFMLAALLILMKKCDGEQRTLDMVYKQAKRELLHLLMPVNPIHSQLRYLQYVSGRNRTLDWPPLDRAIRLDCIIVRFIPNFVGEGGCGPVFRIYGQDPFHADKNPKILYSTPKITKNVRAYNMGDCETIKVDINCHIQGDVLIESINLNGDMDREHLMFRAMFNTAFIRSNSLVLNRDNIDVLWYAKDCFPKDFRAEILFSEKDAAAAVLENGTSCFGENEGLPVEAFSKIQEIFSYADWMNPTEDPALKVLQQRRDSSIIHDKLNTSSDKYVESGTLLHGKGPEQPQEKKNEANCFLSSTKQSPDNDMSRKEDKIIKTGYIPPQYRKSDILSQKTPSSLERTSDSSNCVTDSANPYRKQHSYNFALSGSVDTSSSGSMSPQTPPQHSPLSSRAKKVHDFPPYKESDLNSLLPLKSRHPLTEETESQSQDKCQSFNISSTNRTPSSCACQNKSPNDDVSDPPASAIRSTQSPLPSPQLSSPTPPLKKILPVRTRPDSFPSKLQTPPPPPTPPLKEHVQIRAGPQSPPTPPKDEKQIRAGTPPSPPTPPPPPCLSGKSASPTIAPPPPPPPAVPSAPAAPPPPTYFDKGGVKPDNGFPTSLLVGGDGHNVSGTQGHRSTSSTGSKGRIISHTSSNSQTKKLKPLHWLKLSRAVQGSLWAEAQKSGEASKAPEIDMSELESLFSAAVPRAVPSKKSNVQSSVGPKSDKVQLIDHTRAYNCEILLSKVKVPLHEFMSSVLALEESALDTDQVENLMKFCPTKEEIEVLKGYNGDKEKLGRCEQFFLELMKIPRVESKLMVFSFKIQFHSQASDLRDSLHVVNAASEEIRNSVKLRRIMQTILSLGNALNQGTAKGSAIGFRLDTLLKLTETRARNNKITLMHYLCKVVADKLPEVLDFSKDLANLEPAAKVQLKFVAEEMQGINKGLEKVEHELSNSENDGPISETFSKNLKEYLCSAKAEVSSLASLYSLVGRNVDALIIYFGEDPSRCPFEQVVTTLLNFTGMFNKAHEENCNQLELEMKKTEESEKQKCDSVSVKGLCILLSGLVQNGWDDGSEDWCWRKIWKWPGTLRMKILLWKLAYGRLPNKLWITSWSNGDSLCPICRSEDESIIHVFLDCAVVCELWCESIPLIHQDGFFTVWCWRNNVVHLQLMAPSLPHSAGVIKRTLAYVLGSFSPSISHPVAYLLTKRATIAISATKAQFRREDGRNLSPR 1345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1338g00005 1345 ProSiteProfiles C2 tensin-type domain profile. 200 338 IPR014020 -
Gabi1338g00005 1345 SMART it6_source 765 1204 IPR015425 -
Gabi1338g00005 1345 MobiDBLite consensus disorder prediction 432 491 - -
Gabi1338g00005 1345 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 204 337 IPR035892 -
Gabi1338g00005 1345 Coils Coil 1139 1159 - -
Gabi1338g00005 1345 SUPERFAMILY Formin homology 2 domain (FH2 domain) 778 1156 - -
Gabi1338g00005 1345 MobiDBLite consensus disorder prediction 635 649 - -
Gabi1338g00005 1345 PANTHER FORMIN-J 1 1163 - -
Gabi1338g00005 1345 MobiDBLite consensus disorder prediction 503 525 - -
Gabi1338g00005 1345 MobiDBLite consensus disorder prediction 675 721 - -
Gabi1338g00005 1345 Coils Coil 1052 1072 - -
Gabi1338g00005 1345 ProSiteProfiles Formin homology-2 (FH2) domain profile. 765 1164 IPR015425 -
Gabi1338g00005 1345 Gene3D - 197 340 - -
Gabi1338g00005 1345 SMART PTEN_C2_2 198 337 IPR014020 -
Gabi1338g00005 1345 MobiDBLite consensus disorder prediction 561 610 - -
Gabi1338g00005 1345 Gene3D Protein tyrosine phosphatase superfamily 13 193 IPR029021 -
Gabi1338g00005 1345 MobiDBLite consensus disorder prediction 464 491 - -
Gabi1338g00005 1345 MobiDBLite consensus disorder prediction 503 773 - -
Gabi1338g00005 1345 MobiDBLite consensus disorder prediction 745 773 - -
Gabi1338g00005 1345 Pfam Formin Homology 2 Domain 768 1138 IPR015425 -
Gabi1338g00005 1345 Pfam C2 domain of PTEN tumour-suppressor protein 201 337 IPR014020 -
Gabi1338g00005 1345 Pfam zinc-binding in reverse transcriptase 1188 1257 IPR026960 -
Gabi1338g00005 1345 Gene3D Formin, FH2 domain 761 1149 IPR042201 -
Gabi1338g00005 1345 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 16 187 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1338g00005 Gabi-Chr1338 92680 143631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1338g00005 741 1163 Protein tyrosine phosphatase (PTP) family AT5G58160 68.558 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1338g00005 - - gmx:100786096 1443.33