Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1338g00002 ATGGGTGATAAAGGAACCACAAGCCATGTTCAATCCACGGTTCTCCACGGCAAGTACGAGCTAGGTCGTGTTCTGGGTCATGGAACCTTCGCTAAGGTCTACCATGCCAAAAACTTGCAAACAGGAAAAAGCGTGGCCATGAAGGTGGTGGGGAAAGAGAAGGTAATCGAGGTTGGGATGGTGGAGCAGATGAAGAGAGAGATATCCGCCATGAACATGGTGAAGCACCCCAACATCGTTCAGCTCCACGAAGTAATGGCAAGCAAATCCAAGATCTACATCGCCATGGAACTCGTTCGCGGCGGCGAGTTATTCGACATGATAGCCAAGGGTCGCTTGAGGGAAGACAAGGCCAGAGTTTACTTCCAGCAACTAATCTCCGCCGTCGATTTCTGCCACAGCCGCGGCGTTTACCACCGCGATCTCAAGCCGGAGAATCTTCTCTTAGACGAAGGGGGGAACCTTAAAGTCACCGACTTTGGCCTCAGCACCTTTGCCGAGCACCTGAGGCAAGACGGGTTGTTGCACACCACGTGCGGTACTCCGGCGTACGTGGCGCCGGAGGTGATCGAGAAAAAGGGCTACGACGGCACCAAGGCTGATATTTGGTCTTGTGGGGTCGTCCTCTATGTGCTTCTTGCTGGGTTTCTACCCTTTCAAGATGACAATTTGGTTACCATGTATAAGAAAATTTGCAAGGGTGACTTCAAATGTCCACCGTGGTTCTCCTCCGAAGCTCGCCGTCTTATTACCAAGCTTCTCGACCCGAACTCAAATACCCGAATCACTATTTCCCAGATCATGGATTCTCCTTGGTTCAAAAAATCGGTTCCCAAGAGCATGGAGAAGAAGGAAGAGAAGGAGATGAGGTTCGCGACTACGAGGCCAGCGAGTAGTGTGATTTCCAAGTTGGAGGAGGTTGCGAAGGCTGTGAAGTTCGACGTGAAGAAGAGTGTCAATAAGGTGAGGTTGCAGGGTAAGGACCATGGACGCAAAGGGAAGCTTGCTATTGCGGCGGATATATATGCTGTGACGCAGTCGTTTTCGGTTGTGGAGGTGAAGAAGGACAATGGTGATACCTTGGAGTATAACCAGTTCTGCAGCAAAGAGCTTCGCCCTGCGCTTAAAGACATTGTGTGGAGGACTTCACCTTCTGAGAATCCTAGACTTGCTTGA 1176 0.5077 MGDKGTTSHVQSTVLHGKYELGRVLGHGTFAKVYHAKNLQTGKSVAMKVVGKEKVIEVGMVEQMKREISAMNMVKHPNIVQLHEVMASKSKIYIAMELVRGGELFDMIAKGRLREDKARVYFQQLISAVDFCHSRGVYHRDLKPENLLLDEGGNLKVTDFGLSTFAEHLRQDGLLHTTCGTPAYVAPEVIEKKGYDGTKADIWSCGVVLYVLLAGFLPFQDDNLVTMYKKICKGDFKCPPWFSSEARRLITKLLDPNSNTRITISQIMDSPWFKKSVPKSMEKKEEKEMRFATTRPASSVISKLEEVAKAVKFDVKKSVNKVRLQGKDHGRKGKLAIAADIYAVTQSFSVVEVKKDNGDTLEYNQFCSKELRPALKDIVWRTSPSENPRLA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1338g00002 391 Gene3D Phosphorylase Kinase; domain 1 19 99 - -
Gabi1338g00002 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Gabi1338g00002 391 Gene3D Transferase(Phosphotransferase) domain 1 57 264 - -
Gabi1338g00002 391 Pfam NAF domain 284 317 IPR004041 GO:0007165
Gabi1338g00002 391 CDD CIPK_C 290 376 - -
Gabi1338g00002 391 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1338g00002 391 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1338g00002 391 FunFam Non-specific serine/threonine protein kinase 262 380 - -
Gabi1338g00002 391 FunFam Non-specific serine/threonine protein kinase 12 311 - -
Gabi1338g00002 391 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1338g00002 391 Gene3D Kinase associated domain 1, KA1 265 381 - -
Gabi1338g00002 391 ProSitePatterns Protein kinases ATP-binding region signature. 25 52 IPR017441 GO:0005524
Gabi1338g00002 391 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 377 - -
Gabi1338g00002 391 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Gabi1338g00002 391 SUPERFAMILY Protein kinase-like (PK-like) 15 295 IPR011009 -
Gabi1338g00002 391 CDD STKc_SnRK3 18 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1338g00002 Gabi-Chr1338 16675 18679 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1338g00002 3 385 CBL-interacting serine-threonine protein kinases AT4G30960 68.203 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi1338g00002 Pkinase 2.8e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1338g00002 - K07198 gmx:547644 625.55