Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1338g00001 ATGGGTGATAAAGGAACCACAAGCCATGTTCAATCCACGGTTCTCCACGGCAAGTACGAGCTAGGTCGTGTTCTGGGTCATGGAACCTTCGCTAAGGTCTACCATGCCAAAAACTTGCAAACAGGAAAAAGCGTGGCCATGAAGGTGGTGGGGAAAGAGAAGGTAATCGAGGTTGGGATGGTGGAGCAGATGAAGAGAGAGATATCCGCCATGAACATGGTGAAGCACCCCAACATCGTTCAGCTCCACGAAGTAATGGCAAGCAAATCCAAGATCTACATCGCCATGGAACTCGTTCGCGGCGGCGAGTTATTCGACATGATAGCCAAGGGTCGCTTGAGGGAAGACAAGGCCAGAGTTTACTTCCAGCAACTAATCTCCGCCGTCGATTTCTGCCACAGCCGCGGCGTTTACCACCGCGATCTCAAGCCGGAGAATCTTCTCTTAGACGAAGGGGGGAACCTTAAAGTCACCGACTTTGGCCTCAGCACCTTTGCCGAGCACCTGAGGCAAGACGGGTTGTTGCACACCACGTGCGGTACTCCGGCGTACGTGGCGCCGGAGGTGATCGAGAAAAAGGGCTACGACGGCACCAAGGCTGATATTTGGTCTTGTGGGGTCGTCCTCTATGTGCTTCTTGCTGGGTTTCTACCCTTTCAAGATGACAATTTGGTTACCATGTATAAGAAAATTTGCAAGGGTGACTTCAAATGTCCACCGTGGTTCTCCTCCGAAGCTCGCCGTCTTATTACCAAGCTTCTCGACCCGAACTCAAATACCCGAATCACTATTTCCCAGATCATGGATTCTCCTTGGTTCAAAAAATCGGTTCCCAAGAGCATGGTGGAAACAAAGAAAGATGAAAAAGATGAGAGAGAGTTAGATTTACCGTCCACTATGAATGCGTTCCACATAATTTCCCTTTCGGATGGGTTCAATTTGTCAGCATTGTTCGAGGAGGAGAAGAAGGAAGAGAAGGAGATGAGGTTCGCGACTACGAGGCCAGCGAGTAGTGTGATTTCCAAGTTGGAGGAGGTTGCGAAGGCTGTGAAGTTCGACGTGAAGAAGAGTGTCAATAAGGTGAGGTTGCAGGGTAAGGACCATGGACGCAAAGGGAAGCTTGCTATTGCGGCGGATATATATGCTGTGACGCAGTCGTTTTCGGTTGTGGAGGTGAAGAAGGACAATGGTGATACCTTGGAGTATAACCAGTTCTGCAGCAAAGAGCTTCGCCCTGCGCTTAAAGACATTGTGTGGAGGACTTCACCTTCTGAGAATCCTAGACTTGCTTGA 1293 0.4981 MGDKGTTSHVQSTVLHGKYELGRVLGHGTFAKVYHAKNLQTGKSVAMKVVGKEKVIEVGMVEQMKREISAMNMVKHPNIVQLHEVMASKSKIYIAMELVRGGELFDMIAKGRLREDKARVYFQQLISAVDFCHSRGVYHRDLKPENLLLDEGGNLKVTDFGLSTFAEHLRQDGLLHTTCGTPAYVAPEVIEKKGYDGTKADIWSCGVVLYVLLAGFLPFQDDNLVTMYKKICKGDFKCPPWFSSEARRLITKLLDPNSNTRITISQIMDSPWFKKSVPKSMVETKKDEKDERELDLPSTMNAFHIISLSDGFNLSALFEEEKKEEKEMRFATTRPASSVISKLEEVAKAVKFDVKKSVNKVRLQGKDHGRKGKLAIAADIYAVTQSFSVVEVKKDNGDTLEYNQFCSKELRPALKDIVWRTSPSENPRLA 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1338g00001 430 FunFam Non-specific serine/threonine protein kinase 12 303 - -
Gabi1338g00001 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Gabi1338g00001 430 Gene3D Transferase(Phosphotransferase) domain 1 101 297 - -
Gabi1338g00001 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165
Gabi1338g00001 430 Gene3D Phosphorylase Kinase; domain 1 16 100 - -
Gabi1338g00001 430 SUPERFAMILY Protein kinase-like (PK-like) 15 285 IPR011009 -
Gabi1338g00001 430 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1338g00001 430 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1338g00001 430 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1338g00001 430 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 416 - -
Gabi1338g00001 430 FunFam Non-specific serine/threonine protein kinase 295 419 - -
Gabi1338g00001 430 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Gabi1338g00001 430 ProSitePatterns Protein kinases ATP-binding region signature. 25 52 IPR017441 GO:0005524
Gabi1338g00001 430 Gene3D Kinase associated domain 1, KA1 298 420 - -
Gabi1338g00001 430 CDD CIPK_C 301 415 - -
Gabi1338g00001 430 Pfam NAF domain 297 356 IPR004041 GO:0007165
Gabi1338g00001 430 CDD STKc_SnRK3 18 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1338g00001 Gabi-Chr1338 15571 18679 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1338g00001 3 424 CBL-interacting serine-threonine protein kinases AT4G30960 72.120 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi1338g00001 Pkinase 3.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1338g00001 - K07198 gmx:547644 711.835