Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1336g00014 ATGCTCGCGGTGTCACCTTTGAGGAGCACCAAAGATGAAAACAAAGGAGAGATGGAGAGTTTTTCGATGGGAACCGCAACCCATGATTTTGGTGACTTTTCAGATGGGAACTTATTGGAAATCATTGACTTTGATGACCTCTTTGTTGGTGTCGACGTCGAAGGCGATGTCTTGCCGGATTTGGAGATGGACACTGAGATGTTCGCCGAGTTCTCCTCCGTCAGCGGCGGCGAGGAATCGGAGATGAACTCGTCGGTTTCGGTGGAAAACAGCAAAGGTAGTGATGAACAGAATAGAACTAGTTCGAAGAATGAAGATGAAGATAAGACTTGTTGTGGTTCGGGTCAACGTTCGGGGTCAACCCTAGGGGAGGAGATAGTGAGCAAAAGAGATGAATCCGTTGAGGTGAATCCTTCCCCAAAGGATGGTGCAAAAGGAAGAAAATCTTCAGCTCAATCAAAGAATCCTCAAGGGAAGAGAAAAGTCAAGGTTGATTGGACCCCAGAATTGCATAGGCGATTCGTGCAAGCTGTGGAACAGCTAGGAATGGATAAGGCTGTGCCTTCGAGGATTCTGGAGATTATGGGAATTGATTGTCTCACTCGCCATAACATTGCTAGCCACCTTCAAAAATATAGATCCCATAGAAAACATTTGCTAGCGCGTGAAGCTGAAGCAGCAAATTGGAGTCAAAGGAGACAATCATATGGTGTAGCAGCTGCAGTTGGAGGAGAAGGGAAGAGAGATGTTAGCCCTTGGCTTGCACCCACCATGGGTTTCCCTCCCATGACTCCAATGCACCATTTTAGACCCCTACATGTATGGGGTCATCCCTCCATGCACCACTCCTTTATGCACATGTGGCCTAAAAGTCTACCACATTCTCCGTCACCACCACCGCTCTCATGGGCACCAGCAGCAGCTCCTCCACCACCACCACCTCAAGACCCTTCATTTTGGCATGTCCTGCAGCACCAGCAGAGATTTGGATGTCCACCTGTCGCTGGCATCCCACCCCTTGCCATTTGCAAAGCAGATCCCATCAATGGCGTACCTGGTCCCGTGCCCCTCTTCGATTTCCATCCGTCAAAGGAGAGCATAGATGCAGCTCTTGGAGATGTTCTATCAAAACCATGGCTTCCACTGCCTCTTGGACTGAAGGCTCCAGCGCTTGATAGTGTTCTGAGTGAATTACAGAGACAAGGAATTCCACACATTCCACCCTCTTGTGATTGA 1236 0.4887 MLAVSPLRSTKDENKGEMESFSMGTATHDFGDFSDGNLLEIIDFDDLFVGVDVEGDVLPDLEMDTEMFAEFSSVSGGEESEMNSSVSVENSKGSDEQNRTSSKNEDEDKTCCGSGQRSGSTLGEEIVSKRDESVEVNPSPKDGAKGRKSSAQSKNPQGKRKVKVDWTPELHRRFVQAVEQLGMDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAANWSQRRQSYGVAAAVGGEGKRDVSPWLAPTMGFPPMTPMHHFRPLHVWGHPSMHHSFMHMWPKSLPHSPSPPPLSWAPAAAPPPPPPQDPSFWHVLQHQQRFGCPPVAGIPPLAICKADPINGVPGPVPLFDFHPSKESIDAALGDVLSKPWLPLPLGLKAPALDSVLSELQRQGIPHIPPSCD 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1336g00014 411 NCBIfam myb-like DNA-binding domain, SHAQKYF class 161 215 IPR006447 GO:0003677
Gabi1336g00014 411 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 158 217 IPR017930 -
Gabi1336g00014 411 Gene3D - 158 219 - -
Gabi1336g00014 411 MobiDBLite consensus disorder prediction 124 142 - -
Gabi1336g00014 411 SUPERFAMILY Homeodomain-like 159 218 IPR009057 -
Gabi1336g00014 411 MobiDBLite consensus disorder prediction 72 163 - -
Gabi1336g00014 411 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 410 IPR044825 GO:0003700|GO:0045893
Gabi1336g00014 411 MobiDBLite consensus disorder prediction 296 315 - -
Gabi1336g00014 411 MobiDBLite consensus disorder prediction 96 112 - -
Gabi1336g00014 411 Pfam Myb-like DNA-binding domain 164 213 IPR001005 -
Gabi1336g00014 411 MobiDBLite consensus disorder prediction 1 25 - -
Gabi1336g00014 411 MobiDBLite consensus disorder prediction 76 95 - -
Gabi1336g00014 411 FunFam Two-component response regulator 157 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1336g00014 Gabi-Chr1336 205201 211063 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1336g00014 31 297 G2-like Transcription Factor Family AT5G44190 49.077 1.06e-65 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi1336g00014 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1336g00014 - - aprc:113858121 507.679