Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1336g00011 ATGGGTGTGGACTATTACAAGATCTTACAGGTTGATAAGAATGCCAAAGACGATGATTTGAAGAAGGCATATAGGAAACTTGCAATGAAATGGCACCCTGATAAGAACCCAAACAACAAAAAAGAAGCTGAAGCTAAGTTTAAGCAAATTTCCGAAGCCTATGATGTGCTTAGTGATCCTCAGAAGAGAGCTATCTATGATCAATATGGGGAAGAGGGTCTGAAGGGTCAGGTTCCACCACCTGATGCTGGTGGTGCTGGTGGTGGAGGAGCTACTTTCTTTTCCACAGGAGATATCCCGGGATCGTTTCGGTTCAATCCCAGGAACGCTGATGACGTTTTTGCGGAGTTTTTTGGGTTCTCAAGCCCCTTTGGTGGCATGAGTGGAAGAGGTGGTGGTGGTGGTGGCATGAGATCAAGGTTCTCTGGTGGAATGTTTGGTGATGATGTGTTTCGATCTTTTGGGGAAGGAGGAGGGGTACATATGAATCAAGGTGCACCTCGCAAAGCTCCTCCTATTGAGAACAAGTTGCCCTGTACTCTCGAGGATATATATAAAGGGACTACGAAGAAGATGAAGATCTCTAGAGAAATTGCAGATGCCAGTGGTAAAACCATGCCAGTGGAGGAGATATTGACCATTAATGTGAAGCCTGGTTGGAAGAAGGGGACAAAGATCACCTTCCCAGAGAAGGGAAATGAACAGCCAAATGTGACTCCTGCAGATCTTGTTTTCATCATTGATGAAAAACCACATGGTGTCTTCACTCGTGATGGAAATGATCTGATTGTCACCCAGAAGATTTCTCTTGTGGAGGCCTTAACTGGCTATACAATGCACCTCACTACCTTGGATGGTAGAAACTTAAACATACCAATCAACAATGTTATTCATCCAAACTATGAGGAGGTTGTCCCAGGAGAAGGAATGCCAATTCCCAAGGATCCATCAAAGAAGGGGAACTTGAGGATAAAGTTCAACATCAAGTTCCCAACACGGATCACTGATGAACAGAAAGCGGGAATAAGAAAACTCTTAGCTGCCTCAGCTTGA 1053 0.4454 MGVDYYKILQVDKNAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAIYDQYGEEGLKGQVPPPDAGGAGGGGATFFSTGDIPGSFRFNPRNADDVFAEFFGFSSPFGGMSGRGGGGGGMRSRFSGGMFGDDVFRSFGEGGGVHMNQGAPRKAPPIENKLPCTLEDIYKGTTKKMKISREIADASGKTMPVEEILTINVKPGWKKGTKITFPEKGNEQPNVTPADLVFIIDEKPHGVFTRDGNDLIVTQKISLVEALTGYTMHLTTLDGRNLNIPINNVIHPNYEEVVPGEGMPIPKDPSKKGNLRIKFNIKFPTRITDEQKAGIRKLLAASA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1336g00011 350 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gabi1336g00011 350 FunFam Dnaj homolog subfamily b member 169 250 - -
Gabi1336g00011 350 CDD DnaJ_C 171 334 - -
Gabi1336g00011 350 CDD DnaJ 4 59 IPR001623 -
Gabi1336g00011 350 FunFam DnaJ subfamily B member 13 3 128 - -
Gabi1336g00011 350 SMART dnaj_3 3 62 IPR001623 -
Gabi1336g00011 350 Pfam DnaJ C terminal domain 173 331 IPR002939 -
Gabi1336g00011 350 Pfam DnaJ domain 4 67 IPR001623 -
Gabi1336g00011 350 SUPERFAMILY Chaperone J-domain 3 73 IPR036869 -
Gabi1336g00011 350 Gene3D - 172 250 - -
Gabi1336g00011 350 SUPERFAMILY HSP40/DnaJ peptide-binding domain 254 340 IPR008971 GO:0006457|GO:0051082
Gabi1336g00011 350 Gene3D DnaJ domain 3 128 IPR036869 -
Gabi1336g00011 350 FunFam DnaJ subfamily B member 13 252 332 - -
Gabi1336g00011 350 Gene3D - 252 332 - -
Gabi1336g00011 350 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gabi1336g00011 350 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gabi1336g00011 350 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gabi1336g00011 350 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gabi1336g00011 350 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 346 - -
Gabi1336g00011 350 SUPERFAMILY HSP40/DnaJ peptide-binding domain 172 252 IPR008971 GO:0006457|GO:0051082
Gabi1336g00011 350 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1336g00011 Gabi-Chr1336 142866 145502 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1336g00011 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 3.90e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1336g00011 K09510 - gmx:100778672 569.311