Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi1336g00010 | ATGGGTGTGGACTATTACAAGATCTTACAGGTTGATAAGAATGCCAAAGACGATGATTTGAAGAAGGCATATAGGAAACTTGCAATGAAATGGCACCCTGATAAGAACCCAAACAACAAAAAAGAAGCTGAAGCTAAGTTTAAGCAAATTTCCGAAGCCTATGATGTAAGTTTTCAGTTATTATTGAAGGTGCTTAGTGATCCTCAGAAGAGAGCTATCTATGATCAATATGGGGAAGAGGGTCTGAAGGGTCAGGTTCCACCACCTGATGCTGGTGGTGCTGGTGGTGGAGGAGCTACTTTCTTTTCCACAGGAGATATCCCGGGATCGTTTCGGTTCAATCCCAGGAACGCTGATGACGTTTTTGCGGAGTTTTTTGGGTTCTCAAGCCCCTTTGGTGGCATGAGTGGAAGAGGTGGTGGTGGTGGTGGCATGAGATCAAGGTTCTCTGGTGGAATGTTTGGTGATGATGTGTTTCGATCTTTTGGGGAAGGAGGAGGGGTACATATGAATCAAGGTGCACCTCGCAAAGCTCCTCCTATTGAGAACAAGTTGCCCTGTACTCTCGAGGATATATATAAAGGGACTACGAAGAAGATGAAGATCTCTAGAGAAATTGCAGATGCCAGTGGTAAAACCATGCCAGTGGAGGAGATATTGACCATTAATGTGAAGCCTGGTTGGAAGAAGGGGACAAAGATCACCTTCCCAGAGAAGGGAAATGAACAGCCAAATGTGACTCCTGCAGATCTTGTTTTCATCATTGATGAAAAACCACATGGTGTCTTCACTCGTGATGGAAATGATCTGATTGTCACCCAGAAGATTTCTCTTGTGGAGGCCTTAACTGGCTATACAATGCACCTCACTACCTTGGATGGTAGAAACTTAAACATACCAATCAACAATGTTATTCATCCAAACTATGAGGAGGTTGTCCCAGGAGAAGGAATGCCAATTCCCAAGGATCCATCAAAGAAGGGGAACTTGAGGATAAAGTTCAACATCAAGTTCCCAACACGGATCACTGATGAACAGAAAGCGGGAATAAGAAAACTCTTAGCTGCCTCAGCTTGA | 1077 | 0.441 | MGVDYYKILQVDKNAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVSFQLLLKVLSDPQKRAIYDQYGEEGLKGQVPPPDAGGAGGGGATFFSTGDIPGSFRFNPRNADDVFAEFFGFSSPFGGMSGRGGGGGGMRSRFSGGMFGDDVFRSFGEGGGVHMNQGAPRKAPPIENKLPCTLEDIYKGTTKKMKISREIADASGKTMPVEEILTINVKPGWKKGTKITFPEKGNEQPNVTPADLVFIIDEKPHGVFTRDGNDLIVTQKISLVEALTGYTMHLTTLDGRNLNIPINNVIHPNYEEVVPGEGMPIPKDPSKKGNLRIKFNIKFPTRITDEQKAGIRKLLAASA | 358 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi1336g00010 | 358 | Gene3D | - | 180 | 258 | - | - | |
| Gabi1336g00010 | 358 | CDD | DnaJ_C | 179 | 342 | - | - | |
| Gabi1336g00010 | 358 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 262 | 348 | IPR008971 | GO:0006457|GO:0051082 | |
| Gabi1336g00010 | 358 | FunFam | DnaJ subfamily B member 13 | 260 | 340 | - | - | |
| Gabi1336g00010 | 358 | ProSiteProfiles | dnaJ domain profile. | 4 | 78 | IPR001623 | - | |
| Gabi1336g00010 | 358 | Gene3D | DnaJ domain | 3 | 138 | IPR036869 | - | |
| Gabi1336g00010 | 358 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 1 | 354 | - | - | |
| Gabi1336g00010 | 358 | Pfam | DnaJ domain | 4 | 75 | IPR001623 | - | |
| Gabi1336g00010 | 358 | Gene3D | - | 260 | 340 | - | - | |
| Gabi1336g00010 | 358 | FunFam | Dnaj homolog subfamily b member | 177 | 258 | - | - | |
| Gabi1336g00010 | 358 | FunFam | DnaJ subfamily B member 13 | 3 | 136 | - | - | |
| Gabi1336g00010 | 358 | CDD | DnaJ | 4 | 56 | IPR001623 | - | |
| Gabi1336g00010 | 358 | PRINTS | DnaJ domain signature | 42 | 62 | IPR001623 | - | |
| Gabi1336g00010 | 358 | PRINTS | DnaJ domain signature | 70 | 89 | IPR001623 | - | |
| Gabi1336g00010 | 358 | PRINTS | DnaJ domain signature | 6 | 24 | IPR001623 | - | |
| Gabi1336g00010 | 358 | PRINTS | DnaJ domain signature | 24 | 39 | IPR001623 | - | |
| Gabi1336g00010 | 358 | SMART | dnaj_3 | 3 | 70 | IPR001623 | - | |
| Gabi1336g00010 | 358 | Pfam | DnaJ C terminal domain | 181 | 339 | IPR002939 | - | |
| Gabi1336g00010 | 358 | SUPERFAMILY | Chaperone J-domain | 3 | 81 | IPR036869 | - | |
| Gabi1336g00010 | 358 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 180 | 260 | IPR008971 | GO:0006457|GO:0051082 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi1336g00010 | Gabi-Chr1336 | 142862 | 145504 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi1336g00010 | 5 | 77 | C2H2 Transcription Factor Family | AT1G74250 | 35.065 | 1.02e-07 | 52.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi1336g00010 | K09510 | - | gmx:100778672 | 561.992 |