Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1336g00009 ATGGGTGTGGACTATTACAAGATCTTACAGGTTGATAAGAATGCCAAAGACGATGATTTGAAGAAGGCATATAGGAAACTTGCAATGAAATGGCACCCTGATAAGAACCCAAACAACAAAAAAGAAGCTGAAGCTAAGTTTAAGCAAATTTCCGAAGCCTATGATGTGCTTAGTGATCCTCAGAAGAGAGCTATCTATGATCAATATGGGGAAGAGGGTCTGAAGGGTCAGGTTCCACCACCTGATGCTGGTGGTGCTGGTGGTGGAGGAGCTACTTTCTTTTCCACAGGAGATATCCCGGGATCGTTTCGGTTCAATCCCAGGAACGCTGATGACGTTTTTGCGGAGTTTTTTGGGTTCTCAAGCCCCTTTGGTGGCATGAGTGGAAGAGGTGGTGGTGGTGGTGGCATGAGATCAAGTAAAACCATGCCAGTGGAGGAGATATTGACCATTAATGTGAAGCCTGGTTGGAAGAAGGGGACAAAGATCACCTTCCCAGAGAAGGGAAATGAACAGCCAAATGTGACTCCTGCAGATCTTGTTTTCATCATTGATGAAAAACCACATGGTGTCTTCACTCGTGATGGAAATGATCTGATTGTCACCCAGAAGATTTCTCTTGTGGAGGCCTTAACTGGCTATACAATGCACCTCACTACCTTGGATGGTAGAAACTTAAACATACCAATCAACAATGTTATTCATCCAAACTATGAGGAGGTTGTCCCAGGAGAAGGAATGCCAATTCCCAAGGATCCATCAAAGAAGGGGAACTTGAGGATAAAGTTCAACATCAAGTTCCCAACACGGATCACTGATGAACAGAAAGCGGGAATAAGAAAACTCTTAGCTGCCTCAGCTTGA 864 0.4444 MGVDYYKILQVDKNAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAIYDQYGEEGLKGQVPPPDAGGAGGGGATFFSTGDIPGSFRFNPRNADDVFAEFFGFSSPFGGMSGRGGGGGGMRSSKTMPVEEILTINVKPGWKKGTKITFPEKGNEQPNVTPADLVFIIDEKPHGVFTRDGNDLIVTQKISLVEALTGYTMHLTTLDGRNLNIPINNVIHPNYEEVVPGEGMPIPKDPSKKGNLRIKFNIKFPTRITDEQKAGIRKLLAASA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1336g00009 287 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gabi1336g00009 287 SUPERFAMILY Chaperone J-domain 3 73 IPR036869 -
Gabi1336g00009 287 SUPERFAMILY HSP40/DnaJ peptide-binding domain 191 277 IPR008971 GO:0006457|GO:0051082
Gabi1336g00009 287 CDD DnaJ 4 59 IPR001623 -
Gabi1336g00009 287 Gene3D - 130 187 - -
Gabi1336g00009 287 FunFam Dnaj homolog subfamily b member 137 187 - -
Gabi1336g00009 287 CDD DnaJ_C 142 271 - -
Gabi1336g00009 287 SUPERFAMILY HSP40/DnaJ peptide-binding domain 146 189 IPR008971 GO:0006457|GO:0051082
Gabi1336g00009 287 SMART dnaj_3 3 62 IPR001623 -
Gabi1336g00009 287 FunFam DnaJ subfamily B member 13 3 128 - -
Gabi1336g00009 287 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gabi1336g00009 287 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gabi1336g00009 287 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gabi1336g00009 287 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gabi1336g00009 287 Pfam DnaJ C terminal domain 145 268 IPR002939 -
Gabi1336g00009 287 FunFam DnaJ subfamily B member 13 189 269 - -
Gabi1336g00009 287 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 141 283 - -
Gabi1336g00009 287 Gene3D DnaJ domain 3 128 IPR036869 -
Gabi1336g00009 287 Gene3D - 189 269 - -
Gabi1336g00009 287 Pfam DnaJ domain 4 67 IPR001623 -
Gabi1336g00009 287 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1336g00009 Gabi-Chr1336 142860 145506 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1336g00009 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 2.41e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1336g00009 K09510 - sspl:121742637 402.134