Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1336g00008 ATGGGTGTGGACTATTACAAGATCTTACAGGTTGATAAGAATGCCAAAGACGATGATTTGAAGAAGGCATATAGGAAACTTGCAATGAAATGGCACCCTGATAAGAACCCAAACAACAAAAAAGAAGCTGAAGCTAAGTTTAAGCAAATTTCCGAAGCCTATGATGTGCTTAGTGATCCTCAGAAGAGAGCTATCTATGATCAATATGGGGAAGAGGGTCTGAAGGGTCAGGTTCCACCACCTGATGCTGGTGGTGCTGGTGGTGGAGGAGCTACTTTCTTTTCCACAGGAGATATCCCGGGATCGTTTCGGTTCAATCCCAGGAACGCTGATGACGTTTTTGCGGAGTTTTTTGGGTTCTCAAGCCCCTTTGGTGGCATGAGTGGAAGAGGTGGTGGTGGTGGTGGCATGAGATCAAGGTTCTCTGGTGGAATGTTTGGTGATGATGTGTTTCGATCTTTTGGGGAAGGAGCAGTGGAGGAGATATTGACCATTAATGTGAAGCCTGGTTGGAAGAAGGGGACAAAGATCACCTTCCCAGAGAAGGGAAATGAACAGCCAAATGTGACTCCTGCAGATCTTGTTTTCATCATTGATGAAAAACCACATGGTGTCTTCACTCGTGATGGAAATGATCTGATTGTCACCCAGAAGATTTCTCTTGTGGAGGCCTTAACTGGCTATACAATGCACCTCACTACCTTGGATGGTAGAAACTTAAACATACCAATCAACAATGTTATTCATCCAAACTATGAGGAGGTTGTCCCAGGAGAAGGAATGCCAATTCCCAAGGATCCATCAAAGAAGGGGAACTTGAGGATAAAGTTCAACATCAAGTTCCCAACACGGATCACTGATGAACAGAAAGCGGGAATAAGAAAACTCTTAGCTGCCTCAGCTTGA 906 0.4459 MGVDYYKILQVDKNAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAIYDQYGEEGLKGQVPPPDAGGAGGGGATFFSTGDIPGSFRFNPRNADDVFAEFFGFSSPFGGMSGRGGGGGGMRSRFSGGMFGDDVFRSFGEGAVEEILTINVKPGWKKGTKITFPEKGNEQPNVTPADLVFIIDEKPHGVFTRDGNDLIVTQKISLVEALTGYTMHLTTLDGRNLNIPINNVIHPNYEEVVPGEGMPIPKDPSKKGNLRIKFNIKFPTRITDEQKAGIRKLLAASA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1336g00008 301 FunFam DnaJ subfamily B member 13 203 283 - -
Gabi1336g00008 301 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Gabi1336g00008 301 Pfam DnaJ C terminal domain 160 282 IPR002939 -
Gabi1336g00008 301 CDD DnaJ 4 59 IPR001623 -
Gabi1336g00008 301 CDD DnaJ_C 159 285 - -
Gabi1336g00008 301 SUPERFAMILY HSP40/DnaJ peptide-binding domain 161 203 IPR008971 GO:0006457|GO:0051082
Gabi1336g00008 301 SMART dnaj_3 3 62 IPR001623 -
Gabi1336g00008 301 Gene3D - 138 201 - -
Gabi1336g00008 301 Pfam DnaJ domain 4 67 IPR001623 -
Gabi1336g00008 301 SUPERFAMILY HSP40/DnaJ peptide-binding domain 205 291 IPR008971 GO:0006457|GO:0051082
Gabi1336g00008 301 Gene3D DnaJ domain 3 130 IPR036869 -
Gabi1336g00008 301 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 159 297 - -
Gabi1336g00008 301 FunFam DnaJ subfamily B member 13 3 128 - -
Gabi1336g00008 301 SUPERFAMILY Chaperone J-domain 3 73 IPR036869 -
Gabi1336g00008 301 PRINTS DnaJ domain signature 24 39 IPR001623 -
Gabi1336g00008 301 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gabi1336g00008 301 PRINTS DnaJ domain signature 6 24 IPR001623 -
Gabi1336g00008 301 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gabi1336g00008 301 Gene3D - 203 283 - -
Gabi1336g00008 301 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1336g00008 Gabi-Chr1336 142859 145507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1336g00008 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 2.71e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1336g00008 K09510 - gmx:100778672 452.595