Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi1336g00007 | ATGGGTGTGGACTATTACAAGATCTTACAGGTTGATAAGAATGCCAAAGACGATGATTTGAAGAAGGCATATAGGAAACTTGCAATGAAATGGCACCCTGATAAGAACCCAAACAACAAAAAAGAAGCTGAAGCTAAGTTTAAGCAAATTTCCGAAGCCTATGATGTGCTTAGTGATCCTCAGAAGAGAGCTATCTATGATCAATATGGGGAAGAGGGTCTGAAGGGTCAGGTTCCACCACCTGATGCTGGTGGTGCTGGTGGTGGAGGAGCTACTTTCTTTTCCACAGGAGATATCCCGGGATCGTTTCGGTTCAATCCCAGGAACGCTGATGACGTTTTTGCGGAGTTTTTTGGGTTCTCAAGCCCCTTTGGTGGCATGAGTGGAAGAGGTGGTGGTGGTGGTGGCATGAGATCAAGTAAAACCATGCCAGTGGAGGAGATATTGACCATTAATGTGAAGCCTGGTTGGAAGAAGGGGACAAAGATCACCTTCCCAGAGAAGGGAAATGAACAGCCAAATATTTCTCTTGTGGAGGCCTTAACTGGCTATACAATGCACCTCACTACCTTGGATGGTAGAAACTTAAACATACCAATCAACAATGTTATTCATCCAAACTATGAGGAGGTTGTCCCAGGAGAAGGAATGCCAATTCCCAAGGATCCATCAAAGAAGGGGAACTTGAGGATAAAGTTCAACATCAAGTTCCCAACACGGATCACTGATGAACAGAAAGCGGGAATAAGAAAACTCTTAGCTGCCTCAGCTTGA | 774 | 0.447 | MGVDYYKILQVDKNAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDPQKRAIYDQYGEEGLKGQVPPPDAGGAGGGGATFFSTGDIPGSFRFNPRNADDVFAEFFGFSSPFGGMSGRGGGGGGMRSSKTMPVEEILTINVKPGWKKGTKITFPEKGNEQPNISLVEALTGYTMHLTTLDGRNLNIPINNVIHPNYEEVVPGEGMPIPKDPSKKGNLRIKFNIKFPTRITDEQKAGIRKLLAASA | 257 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi1336g00007 | 257 | ProSitePatterns | Nt-dnaJ domain signature. | 47 | 66 | IPR018253 | - | |
| Gabi1336g00007 | 257 | CDD | DnaJ | 4 | 59 | IPR001623 | - | |
| Gabi1336g00007 | 257 | FunFam | DnaJ subfamily B member 13 | 170 | 239 | - | - | |
| Gabi1336g00007 | 257 | Pfam | DnaJ domain | 4 | 67 | IPR001623 | - | |
| Gabi1336g00007 | 257 | Gene3D | DnaJ domain | 3 | 128 | IPR036869 | - | |
| Gabi1336g00007 | 257 | SMART | dnaj_3 | 3 | 62 | IPR001623 | - | |
| Gabi1336g00007 | 257 | Gene3D | - | 175 | 239 | - | - | |
| Gabi1336g00007 | 257 | PRINTS | DnaJ domain signature | 6 | 24 | IPR001623 | - | |
| Gabi1336g00007 | 257 | PRINTS | DnaJ domain signature | 42 | 62 | IPR001623 | - | |
| Gabi1336g00007 | 257 | PRINTS | DnaJ domain signature | 62 | 81 | IPR001623 | - | |
| Gabi1336g00007 | 257 | PRINTS | DnaJ domain signature | 24 | 39 | IPR001623 | - | |
| Gabi1336g00007 | 257 | FunFam | DnaJ subfamily B member 13 | 3 | 128 | - | - | |
| Gabi1336g00007 | 257 | SUPERFAMILY | Chaperone J-domain | 3 | 73 | IPR036869 | - | |
| Gabi1336g00007 | 257 | Gene3D | - | 134 | 174 | - | - | |
| Gabi1336g00007 | 257 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 141 | 174 | - | - | |
| Gabi1336g00007 | 257 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 174 | 247 | IPR008971 | GO:0006457|GO:0051082 | |
| Gabi1336g00007 | 257 | Pfam | DnaJ C terminal domain | 174 | 238 | IPR002939 | - | |
| Gabi1336g00007 | 257 | ProSiteProfiles | dnaJ domain profile. | 4 | 70 | IPR001623 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi1336g00007 | Gabi-Chr1336 | 142855 | 145521 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi1336g00007 | 5 | 69 | C2H2 Transcription Factor Family | AT1G74250 | 39.130 | 1.41e-10 | 59.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi1336g00007 | K09510 | - | csin:114269897 | 333.954 |