Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1336g00005 ATGAACAATTGGACAAGGACTCCCCTCGAATATCAATTTATTCCAGAGCAGCCAACTGTCAGAAATGAGACATATGAGAGAGTTGCCCCCTCTATCCATCATGGTTCTCTTGATGGCATTCCGCATTCCCGGACTTTATTATCAAGTGGGCAATCTTTCCTTAATAGGAATGAATCTATACCTTATGGGTATGGAGTTCAAGATCAGATACCTGGTTTAAATCTTCTTTCTCAGCAAGACAGGCAGAATCATCTTTTGCCGTCTGCTTCAGGAAAGAATGATGATGTTCCCCGAAAAAACCCATTTGTTGATGTAACTGTTGACACTCATGGTGGGGCTCACCCAATAACTCTGATCAACAGCCCACTAATGCCATCTGACAGAAAGGTTATGCATGAGGAGGAACTTTCAAGGTTTCAAAGGAAACAAAGGAATGAAGAGGCTAGGATGCAAAGGGAAATTGAAGCACAAGAGAAAAGAATTAGAAAAGAGCTTGAAAAACAGGATATTCTAAGGCAAAAGAGAGAAGAGCAAATAAAGAAAGAGATGGAGAGGAATGACCGTGAAAGGCGGAAGGAAGAGGAAAGGCTAGTGCGTGAAAGACAGCGGGAGGAGGAGAGGTACCAAAGAGAACAGAGGCGTGAACTGGAGCGGAGGGAGAAGTTTTTACAGAAAGAATCAATTAGAGCCGAGAAACTGAGACAGAAGGAAGAACTACGCAGGGAGAAAGAGGTAGCAAGGATCAAAGCTGCCAATGAAAGAGCTATTGCCCGCAGAATGGTGAAAGAATCAATGGAACTTATTGAAGATGAATGTCTGGAACTCATGGAGTTAGCTGCATCAAAGAAGGGGCTTTCTTCAATACTAGCTCTTGACTATGAAACTATGCAAAATCTTGAATTGTATAGAGATGGGCAGACTTCATTCCCACCCAAGTCTGTACAGTTGAAAAGAGCCTTTTCAATTCAACCTTGGTCAAAGTCTGATGAGAACATAGGAAATCTTTTGATGGTTTGGAGGTTCTTGATTACCTTTGCTGATGTTCTTGGAGTATGGCCGTTTACCTTGGATGAATTTATACAAGCTTTTCATGACTATGATTCAAGGTTGTTAGGTGAGATTCATATTGCGCTTCTGAGATCCCTTATAAAAGATATAGAAGATGTTGCAAGAACAGCCTCTACTGGGTTAGGAGCTAACCAAAACAATGTTGCCAACTCTGGTGGGGGGCATCCACAAGTAGTTGAAGGGGCATATGTGTGGGGTTTTGATATAAGAAATTGGCAGCGACATTTAAATCCATTAACATGGCCAGAGATTTTGCGGCAATTTGCTTTGTCAGCAGGATTTGGGCCTCAAATGAAAAAACAGAATATTGATCAGGTGCATCCTTGCAATAATAATGAGGGTAATGATGGTAGAGATATAATTTCTAGACTACGCAGTGGAGCAGCAGCTAAAAATGCTGTTGCTATTATGCAAGAGAAGGGATTATCTAACCCTAGAAGATCTCGGCATCGCTTGACACCTGGAACTGTTAAATTTGCTGCATTTCATGTCCTTTCTGTTGAAGGAAGCAATGGCCTCAATATACTGGAAGTTGCAAACAAGATTCAGAAATCTGGACTTCGTGATCTTACAACAAGCAAAACACCAGAGGCTTCTATAGCTGCTGCTTTGTCCAGGGATACAAAACTATTTGAAAGGACAGCTCCTTCAACATATTGTGTACGTCCTGCATATAGAAAGGATGCAGCTGATTCTGATGCAATTTTTTCAACTGCCAGGGAAAGAATCAGGTTATTCAGAAGTGGATTCATGGATGTAGAAGTAGATGATGGTGAAAAGGATGATGATTCTGAAAGTGATGTGGCAGAAGATCCTGAGATTAATGATTTAGGAACTGAAATACATTTGAAAAAGAAGGCTTCCAATTCTGAGGAATTTAATGCAAACACTGTAATGAGTGGAAAGGACAGTGAGATTTTGCAAAAGGTTGCTGAAGACTTCAATGAACATAAAGATGTTAGTGCCTCTAGTGAAATTGCTGTTTGCAGCAATGATGTGAATAATTCTAATCTAGAAGGCATGAAAGTTGATGAAGGCATTCTAGGTGAACCATGGGTACATGGGCTTGCAGAAGGAGAGTACTCGGATCTTAGTGTTGAGGAGCGTCTTCATGCTCTTGTTGCTTTGATTGGTGTGGCAATTGAAGGAAATTCAATTCGTGTTGTACTTGAGGAGCGTTTAGAAGCAGCAAATGCTTTAAAGAAGCAGATGTGGGCAGAGGCACAGCTTGATAAACGTCGTATCAAAGAGGAATACTTTTTTAAGATGCAGTCTGTCTCTAATATGGGCAATAAAAATGAAGCAGCTGTTGCAATTCCAACAGTAGAGGGTAAACAAAGCCCATTGCTTGCTGTTGATGACAAAAATGATGAGGCTTTGTTCACTCCCTGTGGCCAGCATGAACAGACAAATGTACTACAGGAAAATCAGAATCATCTTCGGAGTTTTCCATTAGAAGTCAACATGCAGATGCAAGATTGTTCTATGGGCCCAGATAATTATTTTTTCCAACAATCAGGATTTGCTGCTGAAAAATCAAGGCCAAATTTAAAATCATACATTGGCCACCTGGCAGAGCAAACTTACATGTATAGGTCATTGCCTCTTGGTTTGGATCGAAGACATAATCGATACTGGCGGTTCATTGCATCTGCTTCTCATAATGATCCAGGCTGTGGCAGGATTTTTGTGGAGTTGCATGATGGTTGTTGGAGGCTGATTGATTCTGAAGAGGGTTTTGATGCTCTACTGGCATCTTTGGATGTACGAGGGATCAGGGAGTCCCACTTACATATGATGCTGCAAAGAATTGAGATGTCCTTCAGGAAATCTGTGAGAAGGAATGTCCTAAATGGTAATATGAGAATGCAAAATGGAGATGCTGTCAACGGACTAAAGACAGAAGTTGTTGAAATGGTTAAAAACCAAGACTGTAATGCTAATAGTAATATTCACTGTCCTACTTCTGTATGCATTGATAATTCAGACGCAACTGTGACCTCAACATCTTTTGTGGTTCAGCTTGGAAGAAATGAAGCTGAGAACAAAGATATTTTTATGAGATATCAGGACTTTGAGGAATGGATGCGAAAGGAATGCCTAAATTCCTCAATATTATGTGCAATGAAGTTTGAGAAGAAGAGGTGCAGCCAACTGCTGGTCATATGTGATTTGTGCCATCATGTCTATTTCTCTGGAGGAATCCAATGTCCTTCCTGCCATAGAACCTTCAGTACTTTTAAGAGTAACTCTAGTTCTTCTGAACATGTTACTCATTCTAAAGGCAAAATGAAGATTGGCATTGACTATTTCAATGTTTCATCTTCATCTCCTTTGAGGATGAGATTGCTGAAAATCTTCTTGGCAGTTGTTGAGGTAACCCTTCCCCAAGAAGCTCTTCAACCCCTTTGGACAGATGGCTACAGGAAATCTTGGAGTGCAAAGCTGGATGCTTCCTCATCAACTGAAGATATTCTCCAGATATTGACTGCGTTGGAAGGTGCTATAAAAAGGGAGTATTTGGCTTCAAACTATGAAACTACCCATGAGCTGTTGGGTTCCTTTAGTTCTTCTGGATGTCCCATTAATAATGATTCCATAGGTGGTGAAAGCATACCTGTGCTTCCGTGGGTGCCATATACAACAGCTGCTGTGGCTTTAAGGCTCATGGAACTTGATGCGTGTACCTTTTACACCTCGCAGCAGAAGTTGGAATCTGAGAAGGATAAGAGAATTGGAATTGTTATGAAGCTTCCATCAAAGTATGCTGCTGCCAAAAATTCTTACAATGCTGATACAATTGAGACTTCACATCAGGCTGAACATACTGTAGAGAACTGGGTTAATCTTGGTGCGGGACTCACGAGCTACAGCAGAGGACAAAGGACCCGACAAGGCCACAGCCATTCTCAAAGTGGGAGATCACAAGGAAGGGTTGTTAGATCAAGATACAATTCTAGAAAGAGAAGCACTGCCTCCAGCAGCAGGAAAATGGGTAAATTACTTGGATGGAAAGGGAGATCATGTGGAAAAGGAGGACCTGTTCGCGGTCGCCGGAGCATTAGAAGTGGGCAGAAACCAGCAGCAGCCAAGGTGGATGTGATCAGTGGTGAGAGGGATACCCCAAAAGACATCACAGAGGAAACATCGAAAGGTATCTTTGTCAGAGAGGAGATTGATGAAGGTGAAATGGAAGACACTGCTCTAAATGCTAGTAGTTCAGGTAGATCAGGCTATGAAGATGATATTTATCAAGCAACAGGTGATGAGTATGATTATCTGGTGGATAATAATGATAGATATCTTGGTGGATTTAGTGGGAAGTCTGAGAACTTCGTAAAAGAGAGCCACTATAACGTGGATGATGAGGAAGGTGTGGGTATTGATGATGAAGATGATGATGATGGGAGAGTAGATGTTGATGTTGAAGATTACATAATTGGGGACTCTGATACCAGGGACAGCAGAGAAGAAAATCCAGAACAAAACATGGATCCAGATGGAATAGGTTCTACATCATCCGACTACAGTGATTAA 4605 0.4139 MNNWTRTPLEYQFIPEQPTVRNETYERVAPSIHHGSLDGIPHSRTLLSSGQSFLNRNESIPYGYGVQDQIPGLNLLSQQDRQNHLLPSASGKNDDVPRKNPFVDVTVDTHGGAHPITLINSPLMPSDRKVMHEEELSRFQRKQRNEEARMQREIEAQEKRIRKELEKQDILRQKREEQIKKEMERNDRERRKEEERLVRERQREEERYQREQRRELERREKFLQKESIRAEKLRQKEELRREKEVARIKAANERAIARRMVKESMELIEDECLELMELAASKKGLSSILALDYETMQNLELYRDGQTSFPPKSVQLKRAFSIQPWSKSDENIGNLLMVWRFLITFADVLGVWPFTLDEFIQAFHDYDSRLLGEIHIALLRSLIKDIEDVARTASTGLGANQNNVANSGGGHPQVVEGAYVWGFDIRNWQRHLNPLTWPEILRQFALSAGFGPQMKKQNIDQVHPCNNNEGNDGRDIISRLRSGAAAKNAVAIMQEKGLSNPRRSRHRLTPGTVKFAAFHVLSVEGSNGLNILEVANKIQKSGLRDLTTSKTPEASIAAALSRDTKLFERTAPSTYCVRPAYRKDAADSDAIFSTARERIRLFRSGFMDVEVDDGEKDDDSESDVAEDPEINDLGTEIHLKKKASNSEEFNANTVMSGKDSEILQKVAEDFNEHKDVSASSEIAVCSNDVNNSNLEGMKVDEGILGEPWVHGLAEGEYSDLSVEERLHALVALIGVAIEGNSIRVVLEERLEAANALKKQMWAEAQLDKRRIKEEYFFKMQSVSNMGNKNEAAVAIPTVEGKQSPLLAVDDKNDEALFTPCGQHEQTNVLQENQNHLRSFPLEVNMQMQDCSMGPDNYFFQQSGFAAEKSRPNLKSYIGHLAEQTYMYRSLPLGLDRRHNRYWRFIASASHNDPGCGRIFVELHDGCWRLIDSEEGFDALLASLDVRGIRESHLHMMLQRIEMSFRKSVRRNVLNGNMRMQNGDAVNGLKTEVVEMVKNQDCNANSNIHCPTSVCIDNSDATVTSTSFVVQLGRNEAENKDIFMRYQDFEEWMRKECLNSSILCAMKFEKKRCSQLLVICDLCHHVYFSGGIQCPSCHRTFSTFKSNSSSSEHVTHSKGKMKIGIDYFNVSSSSPLRMRLLKIFLAVVEVTLPQEALQPLWTDGYRKSWSAKLDASSSTEDILQILTALEGAIKREYLASNYETTHELLGSFSSSGCPINNDSIGGESIPVLPWVPYTTAAVALRLMELDACTFYTSQQKLESEKDKRIGIVMKLPSKYAAAKNSYNADTIETSHQAEHTVENWVNLGAGLTSYSRGQRTRQGHSHSQSGRSQGRVVRSRYNSRKRSTASSSRKMGKLLGWKGRSCGKGGPVRGRRSIRSGQKPAAAKVDVISGERDTPKDITEETSKGIFVREEIDEGEMEDTALNASSSGRSGYEDDIYQATGDEYDYLVDNNDRYLGGFSGKSENFVKESHYNVDDEEGVGIDDEDDDDGRVDVDVEDYIIGDSDTRDSREENPEQNMDPDGIGSTSSDYSD 1534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1336g00005 1534 ProSiteProfiles DDT domain profile. 329 388 IPR018501 -
Gabi1336g00005 1534 Pfam DDT domain 330 385 IPR018501 -
Gabi1336g00005 1534 Pfam HB1, ASXL, restriction endonuclease HTH domain 511 578 IPR007759 GO:0006355
Gabi1336g00005 1534 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 706 747 IPR028942 -
Gabi1336g00005 1534 ProSiteProfiles HARE-type HTH domain profile. 511 580 IPR007759 GO:0006355
Gabi1336g00005 1534 SMART testlast3 329 388 IPR018501 -
Gabi1336g00005 1534 MobiDBLite consensus disorder prediction 1472 1534 - -
Gabi1336g00005 1534 Coils Coil 140 256 - -
Gabi1336g00005 1534 MobiDBLite consensus disorder prediction 611 632 - -
Gabi1336g00005 1534 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 6 1534 IPR044977 GO:0006357
Gabi1336g00005 1534 MobiDBLite consensus disorder prediction 1314 1389 - -
Gabi1336g00005 1534 MobiDBLite consensus disorder prediction 611 630 - -
Gabi1336g00005 1534 MobiDBLite consensus disorder prediction 183 211 - -
Gabi1336g00005 1534 MobiDBLite consensus disorder prediction 1314 1353 - -
Gabi1336g00005 1534 MobiDBLite consensus disorder prediction 1480 1496 - -
Gabi1336g00005 1534 MobiDBLite consensus disorder prediction 1497 1519 - -
Gabi1336g00005 1534 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 888 960 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1336g00005 Gabi-Chr1336 109810 127720 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1336g00005 10 1448 Homeobox Transcription Factor Family AT5G44180 49.627 0.0 1231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gabi1336g00005 WSD 5.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1336g00005 - - gmx:100797480 2141.31