Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1336g00004 ATGGAGAGTGGTTCGGAAGGAGAGAAGAATAAGAAGCCACCGGAGGGGGAGAACAAGACCAAGCGCAAAATGAAGACTGCTTCCCAGTTGGAAGTTCTGGAGAAAACATATGCTGAGGAGGCCTATCCCTCGGAAGCTTTGCGGGCTGAGCTATCTGTGAAGTTGGGTCTATCTGATCGTCAACTGCAGATGTGGTTCTGTCACCGGAGACTGAAGGACAGGAAGGCTGCGCCAGCCGCCAAGAAGCTGCGAAACGAGGTGGGGGAGGGTGTTGAGCAAATAGCAGTGGCTGATGCTAGGCATGATCCTAGTTTGGTTTCTGGGTTGAAGCAATTTGGTCATCTGGATTCGCGGCGAGTTGTGTCACAGCCTGGGATGATGGCCTTTCCCAGGATGGGAGCTGGATTGCCAGCAATGGAAAGCAACAGTTACTATGAAGCCCATCAGACCATAGAGGAGCTGCGAGCTATTGCATTTGTGGAAAGACAGTTGGGAGAGCCATTAAGAGAGGATGGACCAATTCTAGGGATGAAATTTGATTCCTTGCCGCCTGGTGCATTTGGTACACCAATAGGGACAGTGACATTGGGGCAGCATAGGCAATCTGCAAGGCCTTTTGAGGGAAAAATTTATGAACAATTGGACAAGAATGAAGAGGCTAGGATGCAAAGGGAAATTGAAGCACAAGAGAAAAGAATTAGAAAAGAGCTTGAAAAACAGGATATTCTAAGGCAAAAGAGAGAAGAGCAAATAAAGAAAGAGATGGAGAGGAATGACCGTGAAAGGCGGAAGGAAGAGGAAAGGCTAGTGCGTGAAAGACAGCGGGAGGAGGAGAGGTACCAAAGAGAACAGAGGCGTGAACTGGAGCGGAGGGAGAAGTTTTTACAGAAAGAATCAATTAGAGCCGAGAAACTGAGACAGAAGGAAGAACTACGCAGGGAGAAAGAGGTAGCAAGGATCAAAGCTGCCAATGAAAGAGCTATTGCCCGCAGAATGGTGAAAGAATCAATGGAACTTATTGAAGATGAATGTCTGGAACTCATGGAGTTAGCTGCATCAAAGAAGGGGCTTTCTTCAATACTAGCTCTTGACTATGAAACTATGCAAAATCTTGAATTGTATAGAGATGGGCAGACTTCATTCCCACCCAAGTCTGTACAGTTGAAAAGAGCCTTTTCAATTCAACCTTGGTCAAAGTCTGATGAGAACATAGGAAATCTTTTGATGGTTTGGAGGTTCTTGATTACCTTTGCTGATGTTCTTGGAGTATGGCCGTTTACCTTGGATGAATTTATACAAGCTTTTCATGACTATGATTCAAGGTTGTTAGGTGAGATTCATATTGCGCTTCTGAGATCCCTTATAAAAGATATAGAAGATGTTGCAAGAACAGCCTCTACTGGGTTAGGAGCTAACCAAAACAATGTTGCCAACTCTGGTGGGGGGCATCCACAAGTAGTTGAAGGGGCATATGTGTGGGGTTTTGATATAAGAAATTGGCAGCGACATTTAAATCCATTAACATGGCCAGAGATTTTGCGGCAATTTGCTTTGTCAGCAGGATTTGGGCCTCAAATGAAAAAACAGAATATTGATCAGGTGCATCCTTGCAATAATAATGAGGGTAATGATGGTAGAGATATAATTTCTAGACTACGCAGTGGAGCAGCAGCTAAAAATGCTGTTGCTATTATGCAAGAGAAGGGATTATCTAACCCTAGAAGATCTCGGCATCGCTTGACACCTGGAACTGTTAAATTTGCTGCATTTCATGTCCTTTCTGTTGAAGGAAGCAATGGCCTCAATATACTGGAAGTTGCAAACAAGATTCAGAAATCTGGACTTCGTGATCTTACAACAAGCAAAACACCAGAGGCTTCTATAGCTGCTGCTTTGTCCAGGGATACAAAACTATTTGAAAGGACAGCTCCTTCAACATATTGTGTACGTCCTGCATATAGAAAGGATGCAGCTGATTCTGATGCAATTTTTTCAACTGCCAGGGAAAGAATCAGGTTATTCAGAAGTGGATTCATGGATGTAGAAGTAGATGATGGTGAAAAGGATGATGATTCTGAAAGTGATGTGGCAGAAGATCCTGAGATTAATGATTTAGGAACTGAAATACATTTGAAAAAGAAGGCTTCCAATTCTGAGGAATTTAATGCAAACACTGTAATGAGTGGAAAGGACAGTGAGATTTTGCAAAAGGTTGCTGAAGACTTCAATGAACATAAAGATGTTAGTGCCTCTAGTGAAATTGCTGTTTGCAGCAATGATGTGAATAATTCTAATCTAGAAGGCATGAAAGTTGATGAAGGCATTCTAGGTGAACCATGGGTACATGGGCTTGCAGAAGGAGAGTACTCGGATCTTAGTGTTGAGGAGCGTCTTCATGCTCTTGTTGCTTTGATTGGTGTGGCAATTGAAGGAAATTCAATTCGTGTTGTACTTGAGGAGCGTTTAGAAGCAGCAAATGCTTTAAAGAAGCAGATGTGGGCAGAGGCACAGCTTGATAAACGTCGTATCAAAGAGGAATACTTTTTTAAGATGCAGTCTGTCTCTAATATGGGCAATAAAAATGAAGCAGCTGTTGCAATTCCAACAGTAGAGGGTAAACAAAGCCCATTGCTTGCTGTTGATGACAAAAATGATGAGGCTTTGTTCACTCCCTGTGGCCAGCATGAACAGACAAATGTACTACAGGAAAATCAGAATCATCTTCGGAGTTTTCCATTAGAAGTCAACATGCAGATGCAAGATTGTTCTATGGGCCCAGATAATTATTTTTTCCAACAATCAGGATTTGCTGCTGAAAAATCAAGGCCAAATTTAAAATCATACATTGGCCACCTGGCAGAGCAAACTTACATGTATAGGTCATTGCCTCTTGGTTTGGATCGAAGACATAATCGATACTGGCGGTTCATTGCATCTGCTTCTCATAATGATCCAGGCTGTGGCAGGATTTTTGTGGAGTTGCATGATGGTTGTTGGAGGCTGATTGATTCTGAAGAGGGTTTTGATGCTCTACTGGCATCTTTGGATGTACGAGGGATCAGGGAGTCCCACTTACATATGATGCTGCAAAGAATTGAGATGTCCTTCAGGAAATCTGTGAGAAGGAATGTCCTAAATGGTAATATGAGAATGCAAAATGGAGATGCTGTCAACGGACTAAAGACAGAAGTTGTTGAAATGGTTAAAAACCAAGACTGTAATGCTAATAGTAATATTCACTGTCCTACTTCTGTATGCATTGATAATTCAGACGCAACTGTGACCTCAACATCTTTTGTGGTTCAGCTTGGAAGAAATGAAGCTGAGAACAAAGATATTTTTATGAGATATCAGGACTTTGAGGAATGGATGCGAAAGGAATGCCTAAATTCCTCAATATTATGTGCAATGAAGTTTGAGAAGAAGAGGTGCAGCCAACTGCTGGTCATATGTGATTTGTGCCATCATGTCTATTTCTCTGGAGGAATCCAATGTCCTTCCTGCCATAGAACCTTCAGTACTTTTAAGAGTAACTCTAGTTCTTCTGAACATGTTACTCATTCTAAAGGCAAAATGAAGATTGGCATTGACTATTTCAATGTTTCATCTTCATCTCCTTTGAGGATGAGATTGCTGAAAATCTTCTTGGCAGTTGTTGAGGTAACCCTTCCCCAAGAAGCTCTTCAACCCCTTTGGACAGATGGCTACAGGAAATCTTGGAGTGCAAAGCTGGATGCTTCCTCATCAACTGAAGATATTCTCCAGATATTGACTGCGTTGGAAGGTGCTATAAAAAGGGAGTATTTGGCTTCAAACTATGAAACTACCCATGAGCTGTTGGGTTCCTTTAGTTCTTCTGGATGTCCCATTAATAATGATTCCATAGGTGGTGAAAGCATACCTGTGCTTCCGTGGGTGCCATATACAACAGCTGCTGTGGCTTTAAGGCTCATGGAACTTGATGCGTGTACCTTTTACACCTCGCAGCAGAAGTTGGAATCTGAGAAGGATAAGAGAATTGGAATTGTTATGAAGCTTCCATCAAAGTATGCTGCTGCCAAAAATTCTTACAATGCTGATACAATTGAGACTTCACATCAGGCTGAACATACTGTAGAGAACTGGGTTAATCTTGGTGCGGGACTCACGAGCTACAGCAGAGGACAAAGGACCCGACAAGGCCACAGCCATTCTCAAAGTGGGAGATCACAAGGAAGGGTTGTTAGATCAAGATACAATTCTAGAAAGAGAAGCACTGCCTCCAGCAGCAGGAAAATGGGTAAATTACTTGGATGGAAAGGGAGATCATGTGGAAAAGGAGGACCTGTTCGCGGTCGCCGGAGCATTAGAAGTGGGCAGAAACCAGCAGCAGCCAAGGTGGATGTGATCAGTGGTGAGAGGGATACCCCAAAAGACATCACAGAGGAAACATCGAAAGGTATCTTTGTCAGAGAGGAGATTGATGAAGGTGAAATGGAAGACACTGCTCTAAATGCTAGTAGTTCAGGTAGATCAGGCTATGAAGATGATATTTATCAAGCAACAGGTGATGAGTATGATTATCTGGTGGATAATAATGATAGATATCTTGGTGGATTTAGTGGGAAGTCTGAGAACTTCGTAAAAGAGAGCCACTATAACGTGGATGATGAGGAAGGTGTGGGTATTGATGATGAAGATGATGATGATGGGAGAGTAGATGTTGATGTTGAAGATTACATAATTGGGGACTCTGATACCAGGGACAGCAGAGAAGAAAATCCAGAACAAAACATGGATCCAGATGGAATAGGTTCTACATCATCCGACTACAGTGATTAA 4821 0.4252 MESGSEGEKNKKPPEGENKTKRKMKTASQLEVLEKTYAEEAYPSEALRAELSVKLGLSDRQLQMWFCHRRLKDRKAAPAAKKLRNEVGEGVEQIAVADARHDPSLVSGLKQFGHLDSRRVVSQPGMMAFPRMGAGLPAMESNSYYEAHQTIEELRAIAFVERQLGEPLREDGPILGMKFDSLPPGAFGTPIGTVTLGQHRQSARPFEGKIYEQLDKNEEARMQREIEAQEKRIRKELEKQDILRQKREEQIKKEMERNDRERRKEEERLVRERQREEERYQREQRRELERREKFLQKESIRAEKLRQKEELRREKEVARIKAANERAIARRMVKESMELIEDECLELMELAASKKGLSSILALDYETMQNLELYRDGQTSFPPKSVQLKRAFSIQPWSKSDENIGNLLMVWRFLITFADVLGVWPFTLDEFIQAFHDYDSRLLGEIHIALLRSLIKDIEDVARTASTGLGANQNNVANSGGGHPQVVEGAYVWGFDIRNWQRHLNPLTWPEILRQFALSAGFGPQMKKQNIDQVHPCNNNEGNDGRDIISRLRSGAAAKNAVAIMQEKGLSNPRRSRHRLTPGTVKFAAFHVLSVEGSNGLNILEVANKIQKSGLRDLTTSKTPEASIAAALSRDTKLFERTAPSTYCVRPAYRKDAADSDAIFSTARERIRLFRSGFMDVEVDDGEKDDDSESDVAEDPEINDLGTEIHLKKKASNSEEFNANTVMSGKDSEILQKVAEDFNEHKDVSASSEIAVCSNDVNNSNLEGMKVDEGILGEPWVHGLAEGEYSDLSVEERLHALVALIGVAIEGNSIRVVLEERLEAANALKKQMWAEAQLDKRRIKEEYFFKMQSVSNMGNKNEAAVAIPTVEGKQSPLLAVDDKNDEALFTPCGQHEQTNVLQENQNHLRSFPLEVNMQMQDCSMGPDNYFFQQSGFAAEKSRPNLKSYIGHLAEQTYMYRSLPLGLDRRHNRYWRFIASASHNDPGCGRIFVELHDGCWRLIDSEEGFDALLASLDVRGIRESHLHMMLQRIEMSFRKSVRRNVLNGNMRMQNGDAVNGLKTEVVEMVKNQDCNANSNIHCPTSVCIDNSDATVTSTSFVVQLGRNEAENKDIFMRYQDFEEWMRKECLNSSILCAMKFEKKRCSQLLVICDLCHHVYFSGGIQCPSCHRTFSTFKSNSSSSEHVTHSKGKMKIGIDYFNVSSSSPLRMRLLKIFLAVVEVTLPQEALQPLWTDGYRKSWSAKLDASSSTEDILQILTALEGAIKREYLASNYETTHELLGSFSSSGCPINNDSIGGESIPVLPWVPYTTAAVALRLMELDACTFYTSQQKLESEKDKRIGIVMKLPSKYAAAKNSYNADTIETSHQAEHTVENWVNLGAGLTSYSRGQRTRQGHSHSQSGRSQGRVVRSRYNSRKRSTASSSRKMGKLLGWKGRSCGKGGPVRGRRSIRSGQKPAAAKVDVISGERDTPKDITEETSKGIFVREEIDEGEMEDTALNASSSGRSGYEDDIYQATGDEYDYLVDNNDRYLGGFSGKSENFVKESHYNVDDEEGVGIDDEDDDDGRVDVDVEDYIIGDSDTRDSREENPEQNMDPDGIGSTSSDYSD 1606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1336g00004 1606 SMART testlast3 401 460 IPR018501 -
Gabi1336g00004 1606 SMART HOX_1 18 80 IPR001356 GO:0003677
Gabi1336g00004 1606 Coils Coil 219 328 - -
Gabi1336g00004 1606 Pfam DDT domain 402 457 IPR018501 -
Gabi1336g00004 1606 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 960 1032 IPR028941 -
Gabi1336g00004 1606 CDD homeodomain 19 75 IPR001356 GO:0003677
Gabi1336g00004 1606 MobiDBLite consensus disorder prediction 1 29 - -
Gabi1336g00004 1606 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 4 217 IPR044977 GO:0006357
Gabi1336g00004 1606 ProSiteProfiles DDT domain profile. 401 460 IPR018501 -
Gabi1336g00004 1606 MobiDBLite consensus disorder prediction 1544 1606 - -
Gabi1336g00004 1606 MobiDBLite consensus disorder prediction 1386 1461 - -
Gabi1336g00004 1606 MobiDBLite consensus disorder prediction 683 702 - -
Gabi1336g00004 1606 ProSiteProfiles HARE-type HTH domain profile. 583 652 IPR007759 GO:0006355
Gabi1336g00004 1606 Pfam HB1, ASXL, restriction endonuclease HTH domain 583 650 IPR007759 GO:0006355
Gabi1336g00004 1606 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 778 819 IPR028942 -
Gabi1336g00004 1606 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Gabi1336g00004 1606 MobiDBLite consensus disorder prediction 255 283 - -
Gabi1336g00004 1606 SUPERFAMILY Homeodomain-like 14 75 IPR009057 -
Gabi1336g00004 1606 MobiDBLite consensus disorder prediction 683 704 - -
Gabi1336g00004 1606 Gene3D - 3 78 - -
Gabi1336g00004 1606 MobiDBLite consensus disorder prediction 1552 1568 - -
Gabi1336g00004 1606 MobiDBLite consensus disorder prediction 1386 1425 - -
Gabi1336g00004 1606 MobiDBLite consensus disorder prediction 1569 1591 - -
Gabi1336g00004 1606 Pfam Homeodomain 19 75 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1336g00004 Gabi-Chr1336 108652 127720 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1336g00004 1 215 Homeobox Transcription Factor Family AT5G44180 48.858 1.99e-44 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gabi1336g00004 WSD 6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1336g00004 - - gmx:100797480 1939.47