Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1336g00003 ATGGAGAGTGGTTCGGAAGGAGAGAAGAATAAGAAGCCACCGGAGGGGGAGAACAAGACCAAGCGCAAAATGAAGACTGCTTCCCAGTTGGAAGTTCTGGAGAAAACATATGCTGAGGAGGCCTATCCCTCGGAAGCTTTGCGGGCTGAGCTATCTGTGAAGTTGGGTCTATCTGATCGTCAACTGCAGATGTGGTTCTGTCACCGGAGACTGAAGGACAGGAAGGCTGCGCCAGCCGCCAAGAAGCTGCGAAACGAGGTGGGGGAGGGTGTTGAGCAAATAGCAGTGGCTGATGCTAGGCATGATCCTAGTTTGGTTTCTGGGTTGAAGCAATTTGGTCATCTGGATTCGCGGCGAGTTGTGTCACAGCCTGGGATGATGGCCTTTCCCAGGATGGGAGCTGGATTGCCAGCAATGGAAAGCAACAGTTACTATGAAGCCCATCAGACCATAGAGGAGCTGCGAGCTATTGCATTTGTGGAAAGACAGTTGGGAGAGCCATTAAGAGAGGATGGACCAATTCTAGGGATGAAATTTGATTCCTTGCCGCCTGGTGCATTTGGTACACCAATAGGGACAGTGACATTGGGGCAGCATAGGCAATCTGCAAGGCCTTTTGAGGGAAAAATTTATGAACAATTGGACAAGGGTGTTTCAATTTCAAGGACTCCCCTCGAATATCAATTTATTCCAGAGCAGCCAACTGTCAGAAATGAGACATATGAGAGAGTTGCCCCCTCTATCCATCATGGTTCTCTTGATGGCATTCCGCATTCCCGGACTTTATTATCAAGTGGGCAATCTTTCCTTAATAGGAATGAATCTATACCTTATGGGTATGGAGTTCAAGATCAGATACCTGGTTTAAATCTTCTTTCTCAGCAAGACAGGCAGAATCATCTTTTGCCGTCTGCTTCAGGAAAGAATGATGATGTTCCCCGAAAAAACCCATTTGTTGATGTAACTGTTGACACTCATGGTGGGGCTCACCCAATAACTCTGATCAACAGCCCACTAATGCCATCTGACAGAAAGGTTATGCATGAGGAGGAACTTTCAAGGTTTCAAAGGAAACAAAGGAATGAAGAGGCTAGGATGCAAAGGGAAATTGAAGCACAAGAGAAAAGAATTAGAAAAGAGCTTGAAAAACAGGATATTCTAAGGCAAAAGAGAGAAGAGCAAATAAAGAAAGAGATGGAGAGGAATGACCGTGAAAGGCGGAAGGAAGAGGAAAGGCTAGTGCGTGAAAGACAGCGGGAGGAGGAGAGGTACCAAAGAGAACAGAGGCGTGAACTGGAGCGGAGGGAGAAGTTTTTACAGAAAGAATCAATTAGAGCCGAGAAACTGAGACAGAAGGAAGAACTACGCAGGGAGAAAGAGGTAGCAAGGATCAAAGCTGCCAATGAAAGAGCTATTGCCCGCAGAATGGTGAAAGAATCAATGGAACTTATTGAAGATGAATGTCTGGAACTCATGGAGTTAGCTGCATCAAAGAAGGGGCTTTCTTCAATACTAGCTCTTGACTATGAAACTATGCAAAATCTTGAATTGTATAGAGATGGGCAGACTTCATTCCCACCCAAGTCTGTACAGTTGAAAAGAGCCTTTTCAATTCAACCTTGGTCAAAGTCTGATGAGAACATAGGAAATCTTTTGATGGTTTGGAGGTTCTTGATTACCTTTGCTGATGTTCTTGGAGTATGGCCGTTTACCTTGGATGAATTTATACAAGCTTTTCATGACTATGATTCAAGGTTGTTAGGTGAGATTCATATTGCGCTTCTGAGATCCCTTATAAAAGATATAGAAGATGTTGCAAGAACAGCCTCTACTGGGTTAGGAGCTAACCAAAACAATGTTGCCAACTCTGGTGGGGGGCATCCACAAGTAGTTGAAGGGGCATATGTGTGGGGTTTTGATATAAGAAATTGGCAGCGACATTTAAATCCATTAACATGGCCAGAGATTTTGCGGCAATTTGCTTTGTCAGCAGGATTTGGGCCTCAAATGAAAAAACAGAATATTGATCAGGTGCATCCTTGCAATAATAATGAGGGTAATGATGGTAGAGATATAATTTCTAGACTACGCAGTGGAGCAGCAGCTAAAAATGCTGTTGCTATTATGCAAGAGAAGGGATTATCTAACCCTAGAAGATCTCGGCATCGCTTGACACCTGGAACTGTTAAATTTGCTGCATTTCATGTCCTTTCTGTTGAAGGAAGCAATGGCCTCAATATACTGGAAGTTGCAAACAAGATTCAGAAATCTGGACTTCGTGATCTTACAACAAGCAAAACACCAGAGGCTTCTATAGCTGCTGCTTTGTCCAGGGATACAAAACTATTTGAAAGGACAGCTCCTTCAACATATTGTGTACGTCCTGCATATAGAAAGGATGCAGCTGATTCTGATGCAATTTTTTCAACTGCCAGGGAAAGAATCAGGTTATTCAGAAGTGGATTCATGGATGTAGAAGTAGATGATGGTGAAAAGGATGATGATTCTGAAAGTGATGTGGCAGAAGATCCTGAGATTAATGATTTAGGAACTGAAATACATTTGAAAAAGAAGGCTTCCAATTCTGAGGAATTTAATGCAAACACTGTAATGAGTGGAAAGGACAGTGAGATTTTGCAAAAGGTTGCTGAAGACTTCAATGAACATAAAGATGTTAGTGCCTCTAGTGAAATTGCTGTTTGCAGCAATGATGTGAATAATTCTAATCTAGAAGGCATGAAAGTTGATGAAGGCATTCTAGGTGAACCATGGGTACATGGGCTTGCAGAAGGAGAGTACTCGGATCTTAGTGTTGAGGAGCGTCTTCATGCTCTTGTTGCTTTGATTGGTGTGGCAATTGAAGGAAATTCAATTCGTGTTGTACTTGAGGAGCGTTTAGAAGCAGCAAATGCTTTAAAGAAGCAGATGTGGGCAGAGGCACAGCTTGATAAACGTCGTATCAAAGAGGAATACTTTTTTAAGATGCAGTCTGTCTCTAATATGGGCAATAAAAATGAAGCAGCTGTTGCAATTCCAACAGTAGAGGGTAAACAAAGCCCATTGCTTGCTGTTGATGACAAAAATGATGAGGCTTTGTTCACTCCCTGTGGCCAGCATGAACAGACAAATGTACTACAGGAAAATCAGAATCATCTTCGGAGTTTTCCATTAGAAGTCAACATGCAGATGCAAGATTGTTCTATGGGCCCAGATAATTATTTTTTCCAACAATCAGGATTTGCTGCTGAAAAATCAAGGCCAAATTTAAAATCATACATTGGCCACCTGGCAGAGCAAACTTACATGTATAGGTCATTGCCTCTTGGTTTGGATCGAAGACATAATCGATACTGGCGGTTCATTGCATCTGCTTCTCATAATGATCCAGGCTGTGGCAGGATTTTTGTGGAGTTGCATGATGGTTGTTGGAGGCTGATTGATTCTGAAGAGGGTTTTGATGCTCTACTGGCATCTTTGGATGTACGAGGGATCAGGGAGTCCCACTTACATATGATGCTGCAAAGAATTGAGATGTCCTTCAGGAAATCTGTGAGAAGGAATGTCCTAAATGGTAATATGAGAATGCAAAATGGAGATGCTGTCAACGGACTAAAGACAGAAGTTGTTGAAATGGTTAAAAACCAAGACTGTAATGCTAATAGTAATATTCACTGTCCTACTTCTGTATGCATTGATAATTCAGACGCAACTGTGACCTCAACATCTTTTGTGGTTCAGCTTGGAAGAAATGAAGCTGAGAACAAAGATATTTTTATGAGATATCAGGACTTTGAGGAATGGATGCGAAAGGAATGCCTAAATTCCTCAATATTATGTGCAATGAAGTTTGAGAAGAAGAGGTGCAGCCAACTGCTGGTCATATGTGATTTGTGCCATCATGTCTATTTCTCTGGAGGAATCCAATGTCCTTCCTGCCATAGAACCTTCAGTACTTTTAAGAGTAACTCTAGTTCTTCTGAACATGTTACTCATTCTAAAGGCAAAATGAAGATTGGCATTGACTATTTCAATGTTTCATCTTCATCTCCTTTGAGGATGAGATTGCTGAAAATCTTCTTGGCAGTTGTTGAGGTAACCCTTCCCCAAGAAGCTCTTCAACCCCTTTGGACAGATGGCTACAGGAAATCTTGGAGTGCAAAGCTGGATGCTTCCTCATCAACTGAAGATATTCTCCAGATATTGACTGCGTTGGAAGGTGCTATAAAAAGGGAGTATTTGGCTTCAAACTATGAAACTACCCATGAGCTGTTGGGTTCCTTTAGTTCTTCTGGATGTCCCATTAATAATGATTCCATAGGTGGTGAAAGCATACCTGTGCTTCCGTGGGTGCCATATACAACAGCTGCTGTGGCTTTAAGGCTCATGGAACTTGATGCGTGTACCTTTTACACCTCGCAGCAGAAGTTGGAATCTGAGAAGGATAAGAGAATTGGAATTGTTATGAAGCTTCCATCAAAGTATGCTGCTGCCAAAAATTCTTACAATGCTGATACAATTGAGACTTCACATCAGGCTGAACATACTGTAGAGAACTGGGTTAATCTTGGTGCGGGACTCACGAGCTACAGCAGAGGACAAAGGACCCGACAAGGCCACAGCCATTCTCAAAGTGGGAGATCACAAGGAAGGGTTGTTAGATCAAGATACAATTCTAGAAAGAGAAGCACTGCCTCCAGCAGCAGGAAAATGGGTAAATTACTTGGATGGAAAGGGAGATCATGTGGAAAAGGAGGACCTGTTCGCGGTCGCCGGAGCATTAGAAGTGGGCAGAAACCAGCAGCAGCCAAGGTGGATGTGATCAGTGGTGAGAGGGATACCCCAAAAGACATCACAGAGGAAACATCGAAAGGTATCTTTGTCAGAGAGGAGATTGATGAAGGTGAAATGGAAGACACTGCTCTAAATGCTAGTAGTTCAGGTAGATCAGGCTATGAAGATGATATTTATCAAGCAACAGGTGATGAGTATGATTATCTGGTGGATAATAATGATAGATATCTTGGTGGATTTAGTGGGAAGTCTGAGAACTTCGTAAAAGAGAGCCACTATAACGTGGATGATGAGGAAGGTGTGGGTATTGATGATGAAGATGATGATGATGGGAGAGTAGATGTTGATGTTGAAGATTACATAATTGGGGACTCTGATACCAGGGACAGCAGAGAAGAAAATCCAGAACAAAACATGGATCCAGATGGAATAGGTTCTACATCATCCGACTACAGTGATTAA 5253 0.4251 MESGSEGEKNKKPPEGENKTKRKMKTASQLEVLEKTYAEEAYPSEALRAELSVKLGLSDRQLQMWFCHRRLKDRKAAPAAKKLRNEVGEGVEQIAVADARHDPSLVSGLKQFGHLDSRRVVSQPGMMAFPRMGAGLPAMESNSYYEAHQTIEELRAIAFVERQLGEPLREDGPILGMKFDSLPPGAFGTPIGTVTLGQHRQSARPFEGKIYEQLDKGVSISRTPLEYQFIPEQPTVRNETYERVAPSIHHGSLDGIPHSRTLLSSGQSFLNRNESIPYGYGVQDQIPGLNLLSQQDRQNHLLPSASGKNDDVPRKNPFVDVTVDTHGGAHPITLINSPLMPSDRKVMHEEELSRFQRKQRNEEARMQREIEAQEKRIRKELEKQDILRQKREEQIKKEMERNDRERRKEEERLVRERQREEERYQREQRRELERREKFLQKESIRAEKLRQKEELRREKEVARIKAANERAIARRMVKESMELIEDECLELMELAASKKGLSSILALDYETMQNLELYRDGQTSFPPKSVQLKRAFSIQPWSKSDENIGNLLMVWRFLITFADVLGVWPFTLDEFIQAFHDYDSRLLGEIHIALLRSLIKDIEDVARTASTGLGANQNNVANSGGGHPQVVEGAYVWGFDIRNWQRHLNPLTWPEILRQFALSAGFGPQMKKQNIDQVHPCNNNEGNDGRDIISRLRSGAAAKNAVAIMQEKGLSNPRRSRHRLTPGTVKFAAFHVLSVEGSNGLNILEVANKIQKSGLRDLTTSKTPEASIAAALSRDTKLFERTAPSTYCVRPAYRKDAADSDAIFSTARERIRLFRSGFMDVEVDDGEKDDDSESDVAEDPEINDLGTEIHLKKKASNSEEFNANTVMSGKDSEILQKVAEDFNEHKDVSASSEIAVCSNDVNNSNLEGMKVDEGILGEPWVHGLAEGEYSDLSVEERLHALVALIGVAIEGNSIRVVLEERLEAANALKKQMWAEAQLDKRRIKEEYFFKMQSVSNMGNKNEAAVAIPTVEGKQSPLLAVDDKNDEALFTPCGQHEQTNVLQENQNHLRSFPLEVNMQMQDCSMGPDNYFFQQSGFAAEKSRPNLKSYIGHLAEQTYMYRSLPLGLDRRHNRYWRFIASASHNDPGCGRIFVELHDGCWRLIDSEEGFDALLASLDVRGIRESHLHMMLQRIEMSFRKSVRRNVLNGNMRMQNGDAVNGLKTEVVEMVKNQDCNANSNIHCPTSVCIDNSDATVTSTSFVVQLGRNEAENKDIFMRYQDFEEWMRKECLNSSILCAMKFEKKRCSQLLVICDLCHHVYFSGGIQCPSCHRTFSTFKSNSSSSEHVTHSKGKMKIGIDYFNVSSSSPLRMRLLKIFLAVVEVTLPQEALQPLWTDGYRKSWSAKLDASSSTEDILQILTALEGAIKREYLASNYETTHELLGSFSSSGCPINNDSIGGESIPVLPWVPYTTAAVALRLMELDACTFYTSQQKLESEKDKRIGIVMKLPSKYAAAKNSYNADTIETSHQAEHTVENWVNLGAGLTSYSRGQRTRQGHSHSQSGRSQGRVVRSRYNSRKRSTASSSRKMGKLLGWKGRSCGKGGPVRGRRSIRSGQKPAAAKVDVISGERDTPKDITEETSKGIFVREEIDEGEMEDTALNASSSGRSGYEDDIYQATGDEYDYLVDNNDRYLGGFSGKSENFVKESHYNVDDEEGVGIDDEDDDDGRVDVDVEDYIIGDSDTRDSREENPEQNMDPDGIGSTSSDYSD 1750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1336g00003 1750 MobiDBLite consensus disorder prediction 1530 1569 - -
Gabi1336g00003 1750 SMART HOX_1 18 80 IPR001356 GO:0003677
Gabi1336g00003 1750 ProSiteProfiles DDT domain profile. 545 604 IPR018501 -
Gabi1336g00003 1750 ProSiteProfiles HARE-type HTH domain profile. 727 796 IPR007759 GO:0006355
Gabi1336g00003 1750 MobiDBLite consensus disorder prediction 1688 1750 - -
Gabi1336g00003 1750 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 4 1750 IPR044977 GO:0006357
Gabi1336g00003 1750 CDD homeodomain 19 75 IPR001356 GO:0003677
Gabi1336g00003 1750 MobiDBLite consensus disorder prediction 1 29 - -
Gabi1336g00003 1750 Gene3D - 3 78 - -
Gabi1336g00003 1750 MobiDBLite consensus disorder prediction 399 427 - -
Gabi1336g00003 1750 Pfam DDT domain 546 601 IPR018501 -
Gabi1336g00003 1750 MobiDBLite consensus disorder prediction 827 848 - -
Gabi1336g00003 1750 SUPERFAMILY Homeodomain-like 14 75 IPR009057 -
Gabi1336g00003 1750 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Gabi1336g00003 1750 MobiDBLite consensus disorder prediction 1696 1712 - -
Gabi1336g00003 1750 MobiDBLite consensus disorder prediction 1713 1735 - -
Gabi1336g00003 1750 MobiDBLite consensus disorder prediction 1530 1605 - -
Gabi1336g00003 1750 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 922 963 IPR028942 -
Gabi1336g00003 1750 Pfam HB1, ASXL, restriction endonuclease HTH domain 727 794 IPR007759 GO:0006355
Gabi1336g00003 1750 MobiDBLite consensus disorder prediction 827 846 - -
Gabi1336g00003 1750 Pfam Homeodomain 19 75 IPR001356 GO:0003677
Gabi1336g00003 1750 SMART testlast3 545 604 IPR018501 -
Gabi1336g00003 1750 Coils Coil 356 472 - -
Gabi1336g00003 1750 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1104 1176 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1336g00003 Gabi-Chr1336 108652 127720 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1336g00003 1 1748 Homeobox Transcription Factor Family AT5G44180 47.896 0.0 1396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gabi1336g00003 WSD 6.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1336g00003 - - gmx:100797480 2424.05