Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1334g00004 ATGAGCAAAGTTTGTCTTCTTGTCCTTGTGATCTTCTACACGGCTTTTCCTTCAAAAGGAATCAGCGATGTTTCTACAAGACCAAGCACCGTTAACATTGGGGCAATTTTATCTTTCAATTCAACCATTGGCAGAGTGGCTAAAGTTGCCATAGAAGCAGCAGTGGATGATATAAATTCCAATGCAACAATTCTTAATGGAACTAAGCTTAATATTTCAATGCAGGATACTAAATTCTCCAATGGATTTCTAGGAATCATTGACTCACTCCTGTTGATGGAGAATGATACTGTGGCTATAATTGGTCCCCAGTACTCAGTCATGGCTCATGTGGTTTCACATATTGCAAATGAGATGCAAGTACCTCTACTATCATTTGCAGCAACAGACCCTACCCTGACTTCACTGCAGTTCCCATATTTTGTTAGGACCACACAGAGTGATGAGTATCAGATGGCTGCTGTGGCAGATATTGTTGACCACTTTCAATGGAGAGACGTAATAGCAATTTTTATTGATGATGATCATGGAAGAAATGGGGTAGCTGCATTAGGGGATAAGCTAGCAGAGAAACGTGGTAAAATATCATATAAAGTAACCTTTAGGCCATATAATATTACCAGTGAAGAAATAAACAATGCATTAGTTAAGATAGCTTTAATGGAGTCTAGGGTAATAGTCCTTCATATATTCACTGCTTTTGGTCTAGATGTACTTCATGCGGCTGATTCACTTGGCATGATGGGAAGCGGTTATGTGTGGATAGCAACAGATTGGCTTTCTACAATACTAGATTCAAACCCATCCTTATTCACATCTCCAGCCATGAATTACATCCAAGGTGTTATCACCTTGCGCACGTATACACCAGATTCACAAATCAAAACAAAATTTATTTCTAAATGGAACAACCTGACCCATAAAAAGGACCCTGATCAGGGCCCTATTGGGTTGAGCACCTTTGGTCTATATGCCTATGACACTGTTTGGGTTCTTGCTTCTGCACTTGATGCATTTTTTAACAGTGGAGGAACTTTGTCATTTTCAAATGATTCAAGTCTAAACATGTTAAGAGGGGATACCCTTCATCTGGATACTATGGGGGTCTTTGTTAATGGTAGCATGTTGCTTCAAGAAATTTTAAAGGTCAACAGAACTGGTTTAACAGGCCAAATGGTGTTTGGTCAAGATGGTAACATATTGCATCCCTCATATGAAATCATTAATGTCATAGGTACTGGAATTAGGAGGATCGGTTATTGGTCTGATTCCTCTGGCCTCCACAATGGGGTAGCTCCTAATCTTTCAAATTCCAGTGAAGGACTATATGGTGTCATATGGCCTGGTCAAACAACTCAAACCCCTCGAGGTTGGGTTTTTGCCAACAATGGAAGACACTTGAGAATTGGAGTGCCACTAAGAATTAGTTACCGTGAATTTGTGTCAAGAATTGAGGGCACTGAAATGTTTGGTGGTTATTGCATAGATGTGTTTACTACTGCACTGAACTTGTTGCCTTATCCAGTTCCATACAAGTTTATTCCATTTGGTGATGGTAAAACCAACCCCCTAAATTCACAACTTCTCCACATGATCACAGTTGGTGCCTTCGATGCTGTGGTTGGGGACATTACTATTACCACAAATCGCACTAAGATAGTGGATTTTACACAGCCATATATTGAGTCTGGGCTAGTGGTTGTGGCACCAATTAAGAAGTTGAAATCCAGTGCTTGGGCTTTCCTGACACCATTTACTCCAATGATGTGGTTTGTAACAGGAATGTTTTTCTTAGTTGTGGGAGCTGTTATTTGGGTTTTAGAGCGTCGCATAAATGATGACTTTAGAGGCCCTGCTAGAAGACAATTTGTCACAATTATCTGGTTTAGCTTTTCAACCCTATTTTTTGCACATAGAGAGAAAACTGTGAGCACCCTTGGTCGCTTAGTGCTAATCATATGGCTGTTTGTGGTTTTGATACTCAACTCAAGCTATATTGCAAGCTTAACATCCATCCTTACAGTGGAACAACTCTCTTCCCCAGTGAAGGGAATTGAAAGCTTGGTTACAAGCAACGTCCGTATTGGTTACCTGAGGGGTTCATTTGCTGAAAATTATCTGACTGAAGAGCTCAACATAGTCAGATCAAGGCTTGTTCCTCTCAACTCCCCATCAGAATATGAAAAGGCCTTGAATGATGGACAAAGTAATGGTGGTGTTGCTGCAATAATAGATGAACGTGCATACATGGAACTCTTCCTAGCAACCAGATGTGAATTTGGTATTGTTGGTCAAGAGTTCACCAAGATGGGATGGGGCTTTGGCTTCCCAAGGGACTCTCCACTAGCTATTGACATGTCAACTGCTATCTTAAAACTATCAGAGAATGGTGACCTTCAGAGAATTCATGACAAATGGTTAACAAGAAGTGCTTGCAGTTCAGAAGGTGCAAAGGAAGGCATAGACCGACTTGAACTAAAAAGTTTTTGGGGTCTGTTCCTTTTGATTGGCATAGCATGCTTCATTGCTCTCCTTTGTTATGTTATTAGAATGGCCTACCGCTTTAGCAGGCACTACAATGGTAACCTTGAAGGCTCATCACGCTCTGCTGGTCTTCGATCATTCCTTTCCTTTGTCAATGAAGAAGAAGAGGAAACCCAACACAGGCCAAAGAAAAGGCGAAAGGAAAAGTGCTCTTGTAGAAGGGTAGTGCATGAAGATGGATCATTGGATGCCTCGAGTGTTAGTGTCACTGTTGAAAATGATCCGCTGGATCTAGTCTTGGAAGAGGTGAATCAACCTCAAAACCAGCCTGAGAATGAAATAGATTATGATCATGTTCATGTCAGTGAGGATGTGTCAGACACAGCCTCCACCCCAGCACCCCGTGATCGAGTTGCGGCTCCAGCTCTGAATAATCCTCCCCAACATCTTGGGGATACAGTTGCTGCTCACGTTGCCCAACCTGTGGATCCAGATTCCAGACTTGCTCAAATCGCGGTTGCTGCAGTTTTGCGGCGAATGGAGGAGATGGAGAATCGTAACAAACTCCAGCAGCAAGATTTTTAG 3069 0.4174 MSKVCLLVLVIFYTAFPSKGISDVSTRPSTVNIGAILSFNSTIGRVAKVAIEAAVDDINSNATILNGTKLNISMQDTKFSNGFLGIIDSLLLMENDTVAIIGPQYSVMAHVVSHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDEYQMAAVADIVDHFQWRDVIAIFIDDDHGRNGVAALGDKLAEKRGKISYKVTFRPYNITSEEINNALVKIALMESRVIVLHIFTAFGLDVLHAADSLGMMGSGYVWIATDWLSTILDSNPSLFTSPAMNYIQGVITLRTYTPDSQIKTKFISKWNNLTHKKDPDQGPIGLSTFGLYAYDTVWVLASALDAFFNSGGTLSFSNDSSLNMLRGDTLHLDTMGVFVNGSMLLQEILKVNRTGLTGQMVFGQDGNILHPSYEIINVIGTGIRRIGYWSDSSGLHNGVAPNLSNSSEGLYGVIWPGQTTQTPRGWVFANNGRHLRIGVPLRISYREFVSRIEGTEMFGGYCIDVFTTALNLLPYPVPYKFIPFGDGKTNPLNSQLLHMITVGAFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIKKLKSSAWAFLTPFTPMMWFVTGMFFLVVGAVIWVLERRINDDFRGPARRQFVTIIWFSFSTLFFAHREKTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKGIESLVTSNVRIGYLRGSFAENYLTEELNIVRSRLVPLNSPSEYEKALNDGQSNGGVAAIIDERAYMELFLATRCEFGIVGQEFTKMGWGFGFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKEGIDRLELKSFWGLFLLIGIACFIALLCYVIRMAYRFSRHYNGNLEGSSRSAGLRSFLSFVNEEEEETQHRPKKRRKEKCSCRRVVHEDGSLDASSVSVTVENDPLDLVLEEVNQPQNQPENEIDYDHVHVSEDVSDTASTPAPRDRVAAPALNNPPQHLGDTVAAHVAQPVDPDSRLAQIAVAAVLRRMEEMENRNKLQQQDF 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1334g00004 1022 Gene3D - 147 427 - -
Gabi1334g00004 1022 Gene3D - 578 713 - -
Gabi1334g00004 1022 SUPERFAMILY Periplasmic binding protein-like I 27 458 IPR028082 -
Gabi1334g00004 1022 Pfam Bacterial extracellular solute-binding proteins, family 3 526 808 IPR001638 -
Gabi1334g00004 1022 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 888 IPR015683 -
Gabi1334g00004 1022 SMART GluR_14 468 809 IPR001320 GO:0015276|GO:0016020
Gabi1334g00004 1022 FunFam Glutamate receptor 147 307 - -
Gabi1334g00004 1022 CDD PBP1_GABAb_receptor_plant 32 427 IPR044440 -
Gabi1334g00004 1022 CDD GluR_Plant 467 807 - -
Gabi1334g00004 1022 FunFam Glutamate receptor 578 708 - -
Gabi1334g00004 1022 Gene3D - 49 402 - -
Gabi1334g00004 1022 Gene3D - 464 577 - -
Gabi1334g00004 1022 Coils Coil 1001 1022 - -
Gabi1334g00004 1022 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Gabi1334g00004 1022 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Gabi1334g00004 1022 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 325 337 - -
Gabi1334g00004 1022 PIRSF IGluLR_plant 1 944 IPR017103 -
Gabi1334g00004 1022 SUPERFAMILY Periplasmic binding protein-like II 443 809 - -
Gabi1334g00004 1022 FunFam Glutamate receptor 462 578 - -
Gabi1334g00004 1022 FunFam Glutamate receptor 704 811 - -
Gabi1334g00004 1022 Pfam Ligand-gated ion channel 809 840 IPR001320 GO:0015276|GO:0016020
Gabi1334g00004 1022 Gene3D - 719 814 - -
Gabi1334g00004 1022 Pfam Receptor family ligand binding region 49 412 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1334g00004 Gabi-Chr1334 97946 103247 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1334g00004 6 895 Ion Channels AT3G51480 57.508 0.0 1063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1334g00004 K05387 - gmx:100790502 1564.28