Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1334g00003 ATGATTGGAGTCTGGCTTGTGGTGTTAATAGTTCTCTCCAATAGTTTCTCTTCAACTGGGGTTGGCATGGATAATTCCACAAAACCTGCTTTTGTAAATATTGGGGTTCTCTACTCTTTCAATACCAGTGTTGGTAGAATTGTGAAAATTGCTGTAGAAGCTGCTGTTGAAGATGTAAATTCTGATCCATCTATTCTGGGTAAAACTAAGTTGAAGGTCTCACTGCAAGAAGATTCCAAATACAGAGGTTTTTTAAGCATTTCTGAGGCCTTGCAGCTCATGGCAACACAAACTGTGGCCATAATTGGCCCTCAGACATCTACAACAGCTCATGTCATATCTCATATTGCAAACGAGCTCCAAGTTCCTTTGCTATCATTTTCAGCCACTGACCCTACCCTTTCTTCACTCCAATTCCCATTCTTTGTTAGAACTGCCTTTAGTGACATATATCAAATGACTGCAATAGCAGACCTTGTTAACTATTATGGGTGGAGAGATGTTATTGCAGTCTATGGTGATGATGATCATGGGAGGAATGGAATTGGTGCATTAGGGGATAAGCTTGCTGAGAGACGTTGCAAGATCTCATTTAAAGCAGCTATGAGTCCTGAAGCAACTAGAGAGGAGATTACTAATGTGCTTGTTCAGGTGGCCCTTGCAGAGTCCCGGGTTTTAGTTCTTCACACAAGTACTGCTTGGGGTCCCAAAGTGTTAAATGTGGCAAAGTCTCTTGGGATGATGGAAAATGGGTATGTCTGGATTGCCACTAATTTTCTGTCTACTCGGTTAGACATAGATAATCCACTCTCTTCAGATGCAATGGATGACATTCAAGGAGTTATTACACTGCGTATGTACATACCTGATTCAAAGCCCAAAAAATGGTTTGTTTCTAGGTGGAAAAACTTGACTAGTGGAAAGACTGCTAATGGTTCCCTTGGTTTGAGTACTTATGCTATCTATGCATATGATACTGTTTATGTGCTTGCTCGTGCTCTTGATAGCTTTTTCAAACAAGGGAACCAGATCACATTTTCTTATGATTCAAGAATATCTAAACTACATGGGGACAACATGCATCTTGATGCTGTGAAAATCTTCAATGAAGGAAACTTGTTGCGTAAAAGTATTTATGAGGTTAACATGACTGGTGTATCAGGTCCTTTCAAGTATACATCAGATGGAAACCTTGTTAATCCTGCATATGAAATCATCAATGTAATTGGATCAGGGACTCGGAGGATCGGTTATTGGTCTAATTACTCTGGATTATCAGTTGTTCCTCCAGAAGCACTTTATTCAAACCCACGAAATCGTTCCAGTGCTAGTAAGAAACTACTCACTGTGTTTTGGCCAGGAGACACAACTCAGAAGCCTCGTGGTTGGGTTTTTCCAAGCAATGGAAGGCTGTTAAAAATTGGAGTACCAAAAAGGGTTAGTTATCGCGAATTTGTGTCGCAAGTACAAGGCACTGACATGTTCAAGGGATTCTGCATTGATGTGTTTCTTTCTGCTGTAAACTTGTTGCCCTATGCTGTCCCCTACAAATTTATTCCATATGGGGATGGTCACAGCAATCCTAGTAACACTGAGCTTGTTCGTCTGATCACAGCGGGTGTCTTTGATGCTGTAGTAGGTGACATTACAATAACTACAGAGAGAACAAGGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTGGTAGTAGCATCAGTTAAGAAGATGGAATCCAATGCTTGGGCATTTTTGATGCCATTTACACCAATGATGTGGACCGTAACAGCTACTTTTTTCCTACTAGTGGGTGCTGTTGTTTGGATTTTAGAGCATAGGCTGAATGATGATTTTAGGGGACCTCCTAAAAAACAAGTAGTCACAGTTTTGTGGTTTAGTCTTTCAACTATGTTCTTTGCTCACAGAGAAAATACAGTTAGCACTCTTGGTCGCTTAGTGCTGCTTATATGGTTATTTGTAGTTCTCATAATTAACTCAAGTTACACGGCAAGCCTGACTTCAATCCTCACAGTGCAACAACTTTCTTCACCTGTTAAAGGCATTGGAAGTTTAATAAATAGCGAAGAGCCTATTGGCTATTTGCAGGGTTCTTTTACTCGAACTTATTTGATTGAGGAAATTGGTATTCATGAATCCAGATTAGTTCCTCTAAAAACACCAGAAGAAACTGCAAAAGCACTGGAAAAAGGTCCCAAAGGAGGTGGTGTTGCTGCATATGTTGATGAGCGTGCTTACATAGAGCTCTTCCTTTCAAGCCGGTGTGGTTTTACTGTTGTAGGTCAAGAGTTCACCAGAAATGGTTGGGGATTTGCCTTTCCACGAGACTCACCATTAGCAGTTGACCTGTCAACCGCCATTTTGGAGTTGGCAGAAAATGGAGATTTACAAAGGATCCATGACAAATGGCTTTTGAGCAGTGCATGCCTATTACAGGGTGCAAAGCTTGAAGTGGACAGACTCAATCTCAAAAGCTTTTGGGGCCTCTATCTAGTCTGTGGGTTGGCATGTTTGCTTGCTCTCATGATATATCTTATTCAGACCATGAGACAGTACATCAAGCACGGCCCTGAGGAACTTGAGTCTTCATGCCAAAACTCAGGATCTTCACGTCTGAGGACTTTCCTTTCGTTTGTAGATGAAAAAGAAGAGATAGTTAAGAGCCGCTCCAAGAGAAAGCAAATGGAGAGGATATTATACAGAAACACAAGTGAGGTTGGATCATCCAGCATCTCCAATACAGAATATTCTCAATCATCATCAAAAATAATTGATTCAACTGTTGAAGTGTAA 2817 0.4082 MIGVWLVVLIVLSNSFSSTGVGMDNSTKPAFVNIGVLYSFNTSVGRIVKIAVEAAVEDVNSDPSILGKTKLKVSLQEDSKYRGFLSISEALQLMATQTVAIIGPQTSTTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFVRTAFSDIYQMTAIADLVNYYGWRDVIAVYGDDDHGRNGIGALGDKLAERRCKISFKAAMSPEATREEITNVLVQVALAESRVLVLHTSTAWGPKVLNVAKSLGMMENGYVWIATNFLSTRLDIDNPLSSDAMDDIQGVITLRMYIPDSKPKKWFVSRWKNLTSGKTANGSLGLSTYAIYAYDTVYVLARALDSFFKQGNQITFSYDSRISKLHGDNMHLDAVKIFNEGNLLRKSIYEVNMTGVSGPFKYTSDGNLVNPAYEIINVIGSGTRRIGYWSNYSGLSVVPPEALYSNPRNRSSASKKLLTVFWPGDTTQKPRGWVFPSNGRLLKIGVPKRVSYREFVSQVQGTDMFKGFCIDVFLSAVNLLPYAVPYKFIPYGDGHSNPSNTELVRLITAGVFDAVVGDITITTERTRMVDFTQPYIESGLVVVASVKKMESNAWAFLMPFTPMMWTVTATFFLLVGAVVWILEHRLNDDFRGPPKKQVVTVLWFSLSTMFFAHRENTVSTLGRLVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIGSLINSEEPIGYLQGSFTRTYLIEEIGIHESRLVPLKTPEETAKALEKGPKGGGVAAYVDERAYIELFLSSRCGFTVVGQEFTRNGWGFAFPRDSPLAVDLSTAILELAENGDLQRIHDKWLLSSACLLQGAKLEVDRLNLKSFWGLYLVCGLACLLALMIYLIQTMRQYIKHGPEELESSCQNSGSSRLRTFLSFVDEKEEIVKSRSKRKQMERILYRNTSEVGSSSISNTEYSQSSSKIIDSTVEV 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1334g00003 938 Gene3D - 148 425 - -
Gabi1334g00003 938 FunFam Glutamate receptor 583 713 - -
Gabi1334g00003 938 Pfam Receptor family ligand binding region 49 410 IPR001828 -
Gabi1334g00003 938 Pfam Bacterial extracellular solute-binding proteins, family 3 529 812 IPR001638 -
Gabi1334g00003 938 SUPERFAMILY Periplasmic binding protein-like II 447 814 - -
Gabi1334g00003 938 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Gabi1334g00003 938 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Gabi1334g00003 938 Gene3D - 583 703 - -
Gabi1334g00003 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 888 IPR015683 -
Gabi1334g00003 938 Gene3D - 467 582 - -
Gabi1334g00003 938 FunFam Glutamate receptor 148 301 - -
Gabi1334g00003 938 CDD GluR_Plant 472 812 - -
Gabi1334g00003 938 FunFam Glutamate receptor 709 816 - -
Gabi1334g00003 938 PIRSF IGluLR_plant 1 937 IPR017103 -
Gabi1334g00003 938 SUPERFAMILY Periplasmic binding protein-like I 29 464 IPR028082 -
Gabi1334g00003 938 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Gabi1334g00003 938 Gene3D - 50 400 - -
Gabi1334g00003 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Gabi1334g00003 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
Gabi1334g00003 938 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 323 335 - -
Gabi1334g00003 938 Gene3D - 704 815 - -
Gabi1334g00003 938 FunFam Glutamate receptor 467 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1334g00003 Gabi-Chr1334 71610 78680 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1334g00003 5 906 Ion Channels AT3G51480 60.000 0.0 1165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1334g00003 K05387 - gmx:100788917 1616.28