Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1334g00002 ATGAAACTTCTTCTTTTACTTATTTTCTTCTCTCTCGTCTCGCTAATCGTGGTATGCTTCAGCTTCAGCCTCACCCGTGACGGTGATGCACACACGCCCCAAAGCTCCCAACTTAGGCTTTTGAAACATCACGATGAAGAACACGTCAAGGGACTTGATCGAGCCCCAGCTCGATCCCTTCTATCTCTTCCACCTAAGAAAACACGGACCGCACTGATTGCCACCCTAGATGGAACTATGCATTTGGTGGAGAGACAAGAGACTGGTTCCATAAGGAGGGTGATATGGTCATTCCCAACAGGCGCGCCAATCTACCGTTCGTATCGAGCTCCTATCAACAAGGATAATGTTAAAGAAAATGCATCTGCAGCAATAATCAGCGGCTTCATGGAATGCGGGGATGACTGGGCATTGTACATGCACGACAAGCACTTTGGTAAAACGAAAATCTCAAAATCTATTGCAGAATATGTAGCTCATATGCCTACCTTTTCAGATGATGGAGCAGTTACACTTGGATCCAAAAGAAGCACTTTGTTTGAAGTTGATGCTAGAACTGGAAGTATCATTCAAATCCACGCTATGTCTGATCTTGATAATGCTTCCGCACCTTGGAGTGATGACAGACAGAGTGTTACAAATATCTTAAGTTCAAAGAATAAGGATATTGATGATCCTGCAAAGTTAAATTCACCAGCATTGCTGCTCAAGATTTTTAGGACAGATTATTCTCTAAAATCTGTTGGTCCTAGCTCAGGAAAAGTTTTGTGGACTATGGCGGTAGCTGAATTTGATGCTGTATTATTATGCCAACATTCCTCAATTGATGTAGAGGATGAGTATGCTTCTGATAGTGGCCTCAATTTTGCGATGCCATACCCATGTCAAGAGATACAACAAGTCTTCCGCCTGAAAAAGAATTTTCTGTTAGAGCCTTCAATCACTGAAGGGGCTTATCATGAAAATGATATGTTTTCAATGCCTGCCTCAGATCCGATGCTTCCTTTGCCACCTAATATTGATACATTTTTCAATGGTCATGATAGTAATGATAATGCAGATGTGCTCCCTCAGCCTCTTGTAGAGAACACTACATCAGGGGAACTTTATCTGAACTGGACGAGTGAATGGTTGACTCCATTACCTCTATTGTTTATGCTCTTTCTTTTGGGCTTTTCATTCTTTTACTATTATCGAACGATTAAAAATCAAGTTACACTGAAGGACCAAAACAAAGAGTCTGAATTAAAAAGTTCACTTGCTAAGAAAAAGAAAGCACGTAAGTCAGGAAAGAACAATGGCATTGTTGACAAAAGGGAAAAACAAATGTCTTCAGAAGATGAGGATGTTCTGACACAAAAGGAGACTGATACAGAAGTGTGGCAGCTCTTTAATCAAGTTGAAGAAGGTGTTGATGGACGAAGGATTGGTAAATTATTTGTTTCAAATAAAGAAATTGCTAAGGGAAGCAATGGGACCATTGTCCTTGAGGGAATATATGAGGGTCGGGCAGTTGCTGTAAAACGTCTTGTCAAGGCTCATAATGATATAGCTTATAAGGAAATCCAAAACCTCATTGTGTCCGACCGTCATCCAAACATTGTTAGATGGCATGGGGTGGAATATGATCAAGATTTTGTTTACCTTGCTCTAGAACGTTGCACATGCAACTTAGATGATTTGATTCAAATGTATTCAGATATATCAGAAAACCCGGTGTTTAGGAAGGACCTAGCTTTCAGATCTCGGATAAAGGTCCAAATTGAGACAGGGAAGGATAATATACAATATCTTTGGAAACCAAATGGCTATCCATCACCTCTATTACTGAAACTGATGAGGGATGTTGTCTCTGGAGTTGTTCATTTGCATGAACTAGGAATAATACATCGAGATTTAAAACCCCAAAATGTTCTCATAATCAAGGAAAGATCCTTATGTGCAAAGCTTTCGGATATGGGCATTAGCAAACGCCTTCTTCAAGATATGTCTTCGTTGGGTCATAATGCTACAGGTGGTGGCAGTTCAGGTTGGCAAGCACCCGAACAGCTTGTTCAAGGACGCCAAACACGGGCTGTTGATTTATTTAGTTTAGGTTGTGTCCTCTTTTTCTGCATGACTGGGGGAAGACATCCGTTTGGTCAACGTCTTGAACGTGATGTCAATATTGTGAACAATAAAATGGATCTTTTCTTATTAGAGTTCATTCCTGAAGCTGAGGATCTTATTACTCATTTACTAAACCCTGACCCTAATCTAAGGCCAAAGGCAATTGAAGTATTGCATCATCCTTTTTTCTGGAGTTCCGAGATGAGACTTTCATTTTTACGTGACACCAGTGACAGGGTGGAACTGGAAGATAGAGACACTGATTGTGATCTTTTGAAGGCGCTAGAAAGCATTGCCAATGTGGCCTTAGGTGGAAAATGGGATGAAAGAATGGAACCAGCTTTCATTGCTAACATTGGTTATTACCGGCGATATAAATTTGAGAGTGTTCGAGACTTATTGCGGGTTATGAGAAACAAGCTAAATCATTACAGAGAATTGCCTCAAGAAATCCAGGAACTTGTAGGACCTATTCCTGAAGGATTCAATGACTACTTTGCAAGTCGATTCCCAAGACTCTTTATTGAAGTGTATAAAGTTATATGCAAATATTGCAAGGAGGAAGACTGTTTTGAAAGATATTTTAAAAATGTTGATTAG 2709 0.4016 MKLLLLLIFFSLVSLIVVCFSFSLTRDGDAHTPQSSQLRLLKHHDEEHVKGLDRAPARSLLSLPPKKTRTALIATLDGTMHLVERQETGSIRRVIWSFPTGAPIYRSYRAPINKDNVKENASAAIISGFMECGDDWALYMHDKHFGKTKISKSIAEYVAHMPTFSDDGAVTLGSKRSTLFEVDARTGSIIQIHAMSDLDNASAPWSDDRQSVTNILSSKNKDIDDPAKLNSPALLLKIFRTDYSLKSVGPSSGKVLWTMAVAEFDAVLLCQHSSIDVEDEYASDSGLNFAMPYPCQEIQQVFRLKKNFLLEPSITEGAYHENDMFSMPASDPMLPLPPNIDTFFNGHDSNDNADVLPQPLVENTTSGELYLNWTSEWLTPLPLLFMLFLLGFSFFYYYRTIKNQVTLKDQNKESELKSSLAKKKKARKSGKNNGIVDKREKQMSSEDEDVLTQKETDTEVWQLFNQVEEGVDGRRIGKLFVSNKEIAKGSNGTIVLEGIYEGRAVAVKRLVKAHNDIAYKEIQNLIVSDRHPNIVRWHGVEYDQDFVYLALERCTCNLDDLIQMYSDISENPVFRKDLAFRSRIKVQIETGKDNIQYLWKPNGYPSPLLLKLMRDVVSGVVHLHELGIIHRDLKPQNVLIIKERSLCAKLSDMGISKRLLQDMSSLGHNATGGGSSGWQAPEQLVQGRQTRAVDLFSLGCVLFFCMTGGRHPFGQRLERDVNIVNNKMDLFLLEFIPEAEDLITHLLNPDPNLRPKAIEVLHHPFFWSSEMRLSFLRDTSDRVELEDRDTDCDLLKALESIANVALGGKWDERMEPAFIANIGYYRRYKFESVRDLLRVMRNKLNHYRELPQEIQELVGPIPEGFNDYFASRFPRLFIEVYKVICKYCKEEDCFERYFKNVD 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1334g00002 902 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Gabi1334g00002 902 PANTHER IRE1-RELATED 149 900 IPR045133 GO:0004521|GO:0004674|GO:0030968
Gabi1334g00002 902 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 472 552 - -
Gabi1334g00002 902 Gene3D KEN domain 769 902 IPR038357 -
Gabi1334g00002 902 SMART serkin_6 480 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1334g00002 902 SUPERFAMILY Protein kinase-like (PK-like) 474 777 IPR011009 -
Gabi1334g00002 902 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 591 768 - -
Gabi1334g00002 902 Gene3D - 61 278 IPR015943 GO:0005515
Gabi1334g00002 902 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 770 902 - -
Gabi1334g00002 902 SMART PGNneu 831 885 - -
Gabi1334g00002 902 Gene3D Transferase(Phosphotransferase) domain 1 600 768 - -
Gabi1334g00002 902 ProSiteProfiles KEN domain profile. 769 900 IPR010513 GO:0004540|GO:0006397
Gabi1334g00002 902 Gene3D Phosphorylase Kinase; domain 1 442 552 - -
Gabi1334g00002 902 MobiDBLite consensus disorder prediction 430 453 - -
Gabi1334g00002 902 Pfam Protein kinase domain 482 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1334g00002 902 CDD RNase_Ire1 770 898 - -
Gabi1334g00002 902 ProSiteProfiles Protein kinase domain profile. 480 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1334g00002 902 MobiDBLite consensus disorder prediction 416 453 - -
Gabi1334g00002 902 Pfam Ribonuclease 2-5A 772 898 IPR010513 GO:0004540|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1334g00002 Gabi-Chr1334 61551 69280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1334g00002 506 765 MAP Kinase Kinase Kinase AT3G06030 25.758 7.30e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Gabi1334g00002 Pkinase 2.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1334g00002 K08852 - gmx:100785904 1295.8