Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1333g00004 ATGGCGACGGCGACGGCGGCGGAGCCAGAATTAAAAACTTACTGGTGTCACGAATGCGACATGAGCGTGGCTCTCACTTGGTCTCCCTCTCCTTCTCTTTTGTGCCCTCATTGCCACACCCACTTCCTTGAGCTCATGGACTCTCCCTTGTCCCAAAACGACGCCGAATCACCACCACTCCCTTCCGCCCTCTTCGACGTCGTTTTCCAAGACGCCCTCGCTCTACTCTCCCCACAACCTCGATCCGCAACCTCCAAGACTCTCACCGTGCCCGTAATTGCAGTGACCAAAACCTTGCTCTCTGAGCTGGACCCAAACGGCGTCGTTTTGTGCGCCGTATGCAAGGACCAAATCTGCGTGGACAACGACGCCAAGCAACTACCTTGCAAGCATTTGTATCACTCCGATTGCATCACGCCCTGGCTGGAGCAGCTTCACGGTTCCTCCTGTCCCCTCTGCCGGTTTCCGATGAGGGAAGATTTAGATGATGATGGTGATGGTGATGGTGATGGTGATGATGATGATGCTTTGTCGCAGTCTTCGCGGACGAGGCAGCTGGTGGTGAGGCTGTCGGAGTTGACTGAGGATGATTTCTACGGTTTGAGAACCACTCTCAATCACATTGCTTCTAGACTCGCCCTCCTCGACTCGAATAATGAGAATCGTGTCCAATTGAATGAACCTGGTGATGTTGCTGGTGAATCAGGATGCTGA 714 0.5364 MATATAAEPELKTYWCHECDMSVALTWSPSPSLLCPHCHTHFLELMDSPLSQNDAESPPLPSALFDVVFQDALALLSPQPRSATSKTLTVPVIAVTKTLLSELDPNGVVLCAVCKDQICVDNDAKQLPCKHLYHSDCITPWLEQLHGSSCPLCRFPMREDLDDDGDGDGDGDDDDALSQSSRTRQLVVRLSELTEDDFYGLRTTLNHIASRLALLDSNNENRVQLNEPGDVAGESGC 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1333g00004 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 66 157 - -
Gabi1333g00004 237 SUPERFAMILY RING/U-box 110 160 - -
Gabi1333g00004 237 Pfam Ring finger domain 111 154 IPR001841 -
Gabi1333g00004 237 Pfam zinc-ribbon 13 46 IPR039525 GO:0061630
Gabi1333g00004 237 MobiDBLite consensus disorder prediction 161 181 - -
Gabi1333g00004 237 ProSiteProfiles Zinc finger RING-type profile. 111 154 IPR001841 -
Gabi1333g00004 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 166 IPR013083 -
Gabi1333g00004 237 SMART ring_2 111 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1333g00004 Gabi-Chr1333 151542 154423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1333g00004 7 71 C3H Transcription Factor Family AT3G60080 47.143 2.79e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1333g00004 K11982 - gmx:100775530 268.47