Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1333g00003 ATGCTTCTTTTTCATCCCAAACCCAAAACATTATTCTTTACCAGACTCTGTTCTTGCTTTAATGCAATGTATAAGAACCCCAAAAAAGAAACCATTCTCATTCCATTTTCCACTTCCATCAATTCCTCAAACTCAATCACCAATTCACAACAGACACAACAAAAAAATCCCAAACCAACACACACAAACAAAACAGCAAAACAGAGAGAGAAACATCAAAAAAAAAAAAAAATGGAGATATTATCACAAATGTGGTCACTGTTAGGGTTACTCACAGTTCTCCAAAACGTCTTACCATCACAGCTTCTCTCTCTGCTTCACTCTCTTTACGAATCGCTGCAAGATTTGCTTTCTCCATACTCATACTTCGAGATCCCGGAGTTCAACGGTTACTGCGGCGTCGACCTCAACGATCTCTACCGCCACGTCCACCTCTACCTCAACGCCGCGAACCACTCCCCCGCGGCGGCGTGCCGCCGCCTCACGCTCTCCCGTTCACCCTCCTCCAACCGAATCTCCTTCGCCGTCGCGCCGAACCACACCGTCCACGACGCATTCCACGGCCACCGCGTTTCCTGGACCCACCACGTCGACACCGTGCAAGACTCCCTCGAGGAGAAGCGCAGCTTCACCCTCCGCCTCCCTAAACGCCACCGCCACGCGCTTCTTTCGCCTTACCTCGCTCACGTGACCGCACGAGCCGAGGAGTTCGAGCGCGTGTCCCGCGAGCGCAGGCTCTTCACCAACAACAACGGATCCGGATCCTTCGAATCGGGTTGGGTCTCGGTCCCGTTTCGCCACCCATCAACATTCGAAACCCTAGCCCTAGAACCGGAGCTGAAGAAGCAGATTAAAAACGACCTAACAGCTTTCTCAAACGGCAAGGAGTTTTACCACCGGGTCGGGCGGGCTTGGAAGCGCGGGTACTTGCTTCACGGCCCACCCGGGTCGGGTAAATCTAGCCTCATTGCAGCTATGGCGAATTTCCTCTGCTACGATGTTTACGACTTGGAACTCACCAAAGTGAACGACAACTCTGAGCTTCGTTCGCTGTTAATCCAAACGACGAACCGTTCCATAATCGTGATCGAGGACATCGATTGTTCAGTGGACTTTAATTTAACAGCGGACAGAACGGCGAAGAAAATGGCTAACAAATTGTCGTCTAAAGTGAGAAAGGAGAAAACGGCGTCGATTTCTTCGGGTTGTGAGGAAACCGGACGGGTCACGCTTTCGGGGCTCCTGAATTTCACGGACGGGTTGTGGTCGTGCTGCGGGGAGGAGAGGCTGGTGGTGTTCACGACCAACCACCGCGACAGCGTGGACCCGGCGTTGGTTCGGTGCGGGCGCATGGACGTGCACGTGAGCCTCGGCACGTGCGGGGTGCATGCGTTTAAAGAGTTGGCGAGGAACTACTTAGGGGTTGAGTCGCACGTGATGTTCGAGGCTGTTGAGGGGTGCATTCGCTCAGGTGGGTCCCTCACGCCGGCACACGTGGGAGAGATTTTGTTGAGGAACAGAGGGGATGCTGACGTGGCGATGAGGGAGGTGGTGTCCGCCATGCAGGCCAGGATGGTGGCTGTTGCAGCCACCGCCGACCCTACGGATAATGAGGAGACGGCGGTGGCGGTGGGAGTGAGGTCGCCGGAGAGTGTGCTGCTGATGGGGTCGCCGGAGAATTGGGATACGTTCAGCGGGAAGAAGAGGAAGGAACAACAACAACATGGGTCGAATAACTGGGACAAGAAAGCCAAGTTTTTTGTGAGGTTAAGGTCGTTGACCAAATCTGACTCTGGTAGATGA 1803 0.5369 MLLFHPKPKTLFFTRLCSCFNAMYKNPKKETILIPFSTSINSSNSITNSQQTQQKNPKPTHTNKTAKQREKHQKKKKMEILSQMWSLLGLLTVLQNVLPSQLLSLLHSLYESLQDLLSPYSYFEIPEFNGYCGVDLNDLYRHVHLYLNAANHSPAAACRRLTLSRSPSSNRISFAVAPNHTVHDAFHGHRVSWTHHVDTVQDSLEEKRSFTLRLPKRHRHALLSPYLAHVTARAEEFERVSRERRLFTNNNGSGSFESGWVSVPFRHPSTFETLALEPELKKQIKNDLTAFSNGKEFYHRVGRAWKRGYLLHGPPGSGKSSLIAAMANFLCYDVYDLELTKVNDNSELRSLLIQTTNRSIIVIEDIDCSVDFNLTADRTAKKMANKLSSKVRKEKTASISSGCEETGRVTLSGLLNFTDGLWSCCGEERLVVFTTNHRDSVDPALVRCGRMDVHVSLGTCGVHAFKELARNYLGVESHVMFEAVEGCIRSGGSLTPAHVGEILLRNRGDADVAMREVVSAMQARMVAVAATADPTDNEETAVAVGVRSPESVLLMGSPENWDTFSGKKRKEQQQHGSNNWDKKAKFFVRLRSLTKSDSGR 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1333g00003 600 SMART AAA_5 305 459 IPR003593 GO:0016887
Gabi1333g00003 600 CDD RecA-like_BCS1 284 455 - -
Gabi1333g00003 600 Gene3D - 456 528 - -
Gabi1333g00003 600 Pfam Domain associated at C-terminal with AAA 98 196 IPR025753 -
Gabi1333g00003 600 PANTHER BCS1 AAA-TYPE ATPASE 84 523 - -
Gabi1333g00003 600 MobiDBLite consensus disorder prediction 44 74 - -
Gabi1333g00003 600 MobiDBLite consensus disorder prediction 44 61 - -
Gabi1333g00003 600 Pfam ATPase family associated with various cellular activities (AAA) 310 457 IPR003959 GO:0005524|GO:0016887
Gabi1333g00003 600 ProSitePatterns AAA-protein family signature. 429 447 IPR003960 GO:0005524|GO:0016887
Gabi1333g00003 600 MobiDBLite consensus disorder prediction 563 583 - -
Gabi1333g00003 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 482 IPR027417 -
Gabi1333g00003 600 Gene3D - 266 455 IPR027417 -
Gabi1333g00003 600 MobiDBLite consensus disorder prediction 557 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1333g00003 Gabi-Chr1333 122036 125018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1333g00003 307 459 Calmodulin-binding Proteins AT3G56690 26.087 2.39e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1333g00003 K08900 - gmx:100820437 879.782