Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1333g00001 ATGTCTTCCTCTAGCAAAAAGCATGACGTATTTCTTAGCTTTAGAGGAGAGGACATACGCACCACCTTCGTTAGCCATCTTCACAATGCTCTGAATAAAGTCAAACCAATCAGAACGTTCATAGATTATGATATTCCAAGAGGAGAAGATGTCTGGCCAACACTTGCCAAGGCGATCAAGGACTCGCATATATCGGTTGTTATTTTCTCGGAAAATTATGCAACCTCAAAATGGTGCTTGGAAGAACTCTACAAAATACTACAATGCAGAAAAGATCATGGTCAAGTTGTTATACCTGTTTTCTATAAAACAGATCCATCACACGTAAGGCACCAGACGGGTAGTTACGAGAAAGCATTCGCCAAACATGAGCGAGATTTTGGGGACAAAGACAGCGAATCCAACAAACGAATTGTACTTAGGTGGAGAACTGCTCTCACTGAAGCAGCCAATATATCTGGATGGGGCTCTCGAAACCATAAGGACGAGAATCAACTCATCGAAAACATTGTGAATGATGTACTGCAAAAGCTGGACTTGAGGGAACCTATACAACAAAAAGGCATTGTAATTGAAAAAAACTGTAGAAATGTTGAATCATTAATGATAAAAATTCGAAAAATTGGAATTTGGGGCATGGGCGGAGTAGGTAAGACGACCATTGCTAAAGTGTTGTTTGCCAAACTCTTTCCCCAATATGACAATACCTGCTTCGTGGTGGCCAATGCAAAGGAACATTCCCTTGGTAAGCTTCTATCTGAGCTATTAAAAGAAGAAATTTCCACATCTAATGTTGTAAAATCCTCATTCAGCATGCTCAAAGATAAAAAAGTTTTCATTGTACTTGATGATGTGGATAAGTTAGATCAAATTGAAGATTTGTGTAGAGAGTACGGTTACCTAAGTCCCTCTAGTAAACTCATCATAACAACAAGGGACAGGCAATTGCTTCAAAAAAATGTTGATTGGATATACGAGGTAGAGGAATGGGAACGTGCAGAATCTATGGAGTTTTTTTGCTTAAAAGCCTTCGAACAAAGCAAACCCCAAATTGGTTACGAGGATCTCTCAGACAAGGCAGTTGATTATGCAGGTGGAGTTCCATTAGCTCTTAAAGTTTTGGGTTCATATCTTCGTTCCAAAGATACTACCTTTTGGGTTAGTACTCTCAGAAAACTCAACACGTATCCAAATAAGGGAATTCAGGACTTGTTACAAGTGAGCTATGATGATGGGTTAGATGATTCAGAGAAGAAAATTTTTCTAGACATAGCATTTTTTTTCGAAGGAAAAGAGAAAGATCATGTCCAATCAATACTAGATGCCTGTGGTTTGGAAGCAACTAGCGGAATAGTAGTCCTTGAAGACAAAGCTTTGATAACTATTTCAAATAGCAAAAGAATACAAATGCATAACTTGCTACAAATAATGGGTTTGGAAATAGTACGTAGAGAAGATGGAAAAAATCCTGGAAGACGTAGCCGATTGAGGGATAGTGAAGCTCGTGAAGTAATTGAGAAAAACAAGGGGACTGATGCAATTGAAGGCATAACATTAGATTTATCTCAAATTAAAGATTTACGTTTGCCTGCTGATACATTCACAAAGATGGAATCCTTAAGATTTCTTAAATTATATATTCCTTCTGGTCGGAGACGTTCTAGTAATACATACATCGACCTTCCTGAGGTTCTTAAGCCATTTTCTGACAAATTGAGGTATGTTGAGTGGACTGGATACCCATTTGAGTCTCTTCCATCACCTTTTTGTGCTAAGTTACTTGTTGAGATTCGCATGCCGCACAGTAATGTCAAACAACTTTGGCAGGGAACACAGGAACTTGATAATTTGGAGGGAATCGACCTAAGTGACAGCAAAAAGTTTGAAAATCTTCCGGATTTGTCTAAGGCGTCAAGACTAAAATGGGTGAATCTCTCCGGTTGTGAGAGTTTGTATGATCTTCATGATTCTGTTTTATCGGCTGATACACTTGTTACTTTGTTACTGGATAGGTGTATAAATCTTAAGAGTGTTAAAGGCAAGAAGCATTTAAAATCTCTGGAGACGATCAGTGTCATTGGCTGCTCAAGTCTGGGGGAATTTGCAGTGTCTTCTGAATTACTAGAAAACTTGGATTTAAGCAATACAGGAATCCAAAGATTGGACACATCAATTGGGCTTCTAAAGAATCTTAAATGGCTTAATCTAGAGGGTTTAAGACTCGGGCATCTTCCAAAGGAGTTATCTTGCCTTAAATCCCTTAGGGAGCTGAAGCTTTCTGACAGTGGACTGGTAATTGACAAACAGCAGCTACATGACTTGTTTGATGGCTTACAATTTCTACAAATACTACATTTAAAAGAGTGTAGTTGCTTGTTTGAACTCCCCGACAACATCAGCATCTTATCAAAAACATTACAGGAATTAAGGCTAGATGGAAGCAATGTGACAAAGTTGCCTGAAAGCATCAAGGATCTTCAAGAGCTTGAAATTCTGTCATTGGAAAATTGCAGGAAGCTTCCGTGCCTACCAGAGCTTCCAGCCCTCATCAAACAGTTATATGCCGTTAATTGCAAGTCATTGGTGTCCATGTCAAATTTAAAGAGTTTGGCAAAAAAGATGTTAGGAAAGGCCAAACACATTTCATTCAAGAATGGATTGAAATTGGATGGACATTCACTCAAATGCATTGAGGAAAGCCTCCATTTAACAATGATGTGTGCAGCATTTCAAAATGTGATAGTAAGAAATTTCGGCGTGTACGTTCTCAGCTTGAATTATAACAGTGTTGAGGTTTGTTTACCAGGAAGCGGAGTCCCAAGTCAGGTCAATTATAGAACAAAAGAGACCTCAATTACCATTGAACTTCCTAACCGTTCCAACTTGCTGGGCTTCATTTACTCTGTTGTTCTTTCTCCAGTCCGTGGAGAGAAGAAGCATGGCACTAAAATAAAATGTGAATGCCCCATGGCGGAAGGTACAAAGGTTACATGGCTAAGGACTGATATAACGGAATTGAAGTCGGATCATGTTTATGTATGGTATGATCCATTTCATTGTGATGGCATTCTCAAATATTATGAACCAAAGGTTCGTTTTGACTTCTTTGTTTCAAATGATACGGGGGAAGTTGATGGTTCGATCTGTATTAAAGAGTGTGGAGTACGCCTCATAAGTGTTTCAGAGCTGCACAATGTTTTACCGGAAATGGACTTGGATTCAGATAAGAAAATGGACTTGAAGAAGGGGTTGGAGGTTGAATCAGGACGAAGCATTACCTTGACAACAATTGAAGGAACTGATGGAATAGTCGATTCGGCTGAAGAAGATAATGAGAGGAAAGGCCATTATTCTAATGTGGAAGACAGCATCAAATCTACTAGCAAGGAAAATACTACGGACTCCACCGATGCTGTCAAAATCAAAGGAAATGAAGTAACACCAACTGAATCTGATGCTGGATTGCATATTAAGGGCATGCCAAATGAAAACAACTTTCATTGGACAACATATATTGAAGAGGCCAAGCATCCAGAAGAAAATCAAAATGTACAAGGGGGACAAAGCATTGTTCATTTTGACACCCATGATCAAATTGTTATAGAACCATACCATGAAAAAGAGAATAAACCAATGGATATTGACAAACCTGAAGGTCAAAATGGATCAGATAATGATCCCTTTGTTGAACTTGAAAGCACTCTGTTGGCAATTAGTGGAAAGTCCTCATCAGCAAAAGCAACCTCTTCTACAAGCGATGTTGCTGTAACAGAAGCTTTGCATAATCTTGAATGCCTATTGCAAAACTCGCTTGAGTCCATTCTCGGTGACTTCGAACTACAACAACAATTAAGTATATCTTTGCAATGCATAGAACAGGGATCGGATGAAAAAGTTACTCCACATGTTGCGAAGCTTGTTCAAAGCATGAAATCCTCTATTGAGGATGTGTTCAGTGAATTTAACTCGACTCAACAAGTAGTCCAAGATCACATTATCCGTTTGAAACAAACAAAAAAACTTGAACAGCAAGGGACAAATGCTAAGAAACGGCGGGATTTAGTGAACAAAGAAATGTGCAAATGTAAGTTTGAAACCGAAGGTCTCGACGAAGAGGCTAAAAAGCTGGATGAAGAGATTCGAATTCTAGTTGAACAGAGAGAAACTGTTGAGTTGAAAAAAACCATGTTGAAGGAGAACCTGGAAAGATGTGATGTAGAAAAGAAGAAATTGGAAGGTGATGCCTGGAATTGGGTACGTGAAAGCAAAAAGCTAAAGCTGGAGATTGAGAAATCAGAATTCTCATACGCTGCTGCCCTGTCTAAGCGGAAGAAATTGAATGAAAGATGGGAAGGTTTCAAAACAGCTTTTGTAGAGCTGTGA 4383 0.3892 MSSSSKKHDVFLSFRGEDIRTTFVSHLHNALNKVKPIRTFIDYDIPRGEDVWPTLAKAIKDSHISVVIFSENYATSKWCLEELYKILQCRKDHGQVVIPVFYKTDPSHVRHQTGSYEKAFAKHERDFGDKDSESNKRIVLRWRTALTEAANISGWGSRNHKDENQLIENIVNDVLQKLDLREPIQQKGIVIEKNCRNVESLMIKIRKIGIWGMGGVGKTTIAKVLFAKLFPQYDNTCFVVANAKEHSLGKLLSELLKEEISTSNVVKSSFSMLKDKKVFIVLDDVDKLDQIEDLCREYGYLSPSSKLIITTRDRQLLQKNVDWIYEVEEWERAESMEFFCLKAFEQSKPQIGYEDLSDKAVDYAGGVPLALKVLGSYLRSKDTTFWVSTLRKLNTYPNKGIQDLLQVSYDDGLDDSEKKIFLDIAFFFEGKEKDHVQSILDACGLEATSGIVVLEDKALITISNSKRIQMHNLLQIMGLEIVRREDGKNPGRRSRLRDSEAREVIEKNKGTDAIEGITLDLSQIKDLRLPADTFTKMESLRFLKLYIPSGRRRSSNTYIDLPEVLKPFSDKLRYVEWTGYPFESLPSPFCAKLLVEIRMPHSNVKQLWQGTQELDNLEGIDLSDSKKFENLPDLSKASRLKWVNLSGCESLYDLHDSVLSADTLVTLLLDRCINLKSVKGKKHLKSLETISVIGCSSLGEFAVSSELLENLDLSNTGIQRLDTSIGLLKNLKWLNLEGLRLGHLPKELSCLKSLRELKLSDSGLVIDKQQLHDLFDGLQFLQILHLKECSCLFELPDNISILSKTLQELRLDGSNVTKLPESIKDLQELEILSLENCRKLPCLPELPALIKQLYAVNCKSLVSMSNLKSLAKKMLGKAKHISFKNGLKLDGHSLKCIEESLHLTMMCAAFQNVIVRNFGVYVLSLNYNSVEVCLPGSGVPSQVNYRTKETSITIELPNRSNLLGFIYSVVLSPVRGEKKHGTKIKCECPMAEGTKVTWLRTDITELKSDHVYVWYDPFHCDGILKYYEPKVRFDFFVSNDTGEVDGSICIKECGVRLISVSELHNVLPEMDLDSDKKMDLKKGLEVESGRSITLTTIEGTDGIVDSAEEDNERKGHYSNVEDSIKSTSKENTTDSTDAVKIKGNEVTPTESDAGLHIKGMPNENNFHWTTYIEEAKHPEENQNVQGGQSIVHFDTHDQIVIEPYHEKENKPMDIDKPEGQNGSDNDPFVELESTLLAISGKSSSAKATSSTSDVAVTEALHNLECLLQNSLESILGDFELQQQLSISLQCIEQGSDEKVTPHVAKLVQSMKSSIEDVFSEFNSTQQVVQDHIIRLKQTKKLEQQGTNAKKRRDLVNKEMCKCKFETEGLDEEAKKLDEEIRILVEQRETVELKKTMLKENLERCDVEKKKLEGDAWNWVRESKKLKLEIEKSEFSYAAALSKRKKLNERWEGFKTAFVEL 1460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1333g00001 1460 SUPERFAMILY "Winged helix" DNA-binding domain 401 485 IPR036390 -
Gabi1333g00001 1460 Gene3D - 2 182 IPR035897 -
Gabi1333g00001 1460 SMART till_3 7 152 IPR000157 GO:0007165
Gabi1333g00001 1460 PRINTS Disease resistance protein signature 207 222 - -
Gabi1333g00001 1460 PRINTS Disease resistance protein signature 824 840 - -
Gabi1333g00001 1460 PRINTS Disease resistance protein signature 364 378 - -
Gabi1333g00001 1460 PRINTS Disease resistance protein signature 272 286 - -
Gabi1333g00001 1460 Pfam Leucine Rich Repeat 594 612 IPR011713 -
Gabi1333g00001 1460 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 155 IPR035897 -
Gabi1333g00001 1460 Gene3D - 331 413 IPR042197 -
Gabi1333g00001 1460 Coils Coil 1366 1414 - -
Gabi1333g00001 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 424 IPR027417 -
Gabi1333g00001 1460 Pfam NB-ARC domain 207 396 IPR002182 GO:0043531
Gabi1333g00001 1460 Pfam C-JID domain 934 1061 IPR045344 -
Gabi1333g00001 1460 SUPERFAMILY L domain-like 519 856 - -
Gabi1333g00001 1460 MobiDBLite consensus disorder prediction 1121 1135 - -
Gabi1333g00001 1460 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 700 IPR044974 GO:0006952
Gabi1333g00001 1460 Gene3D - 190 323 IPR027417 -
Gabi1333g00001 1460 MobiDBLite consensus disorder prediction 1103 1135 - -
Gabi1333g00001 1460 Pfam TIR domain 7 183 IPR000157 GO:0007165
Gabi1333g00001 1460 Gene3D Ribonuclease Inhibitor 707 882 IPR032675 -
Gabi1333g00001 1460 Gene3D Ribonuclease Inhibitor 498 706 IPR032675 -
Gabi1333g00001 1460 MobiDBLite consensus disorder prediction 1106 1120 - -
Gabi1333g00001 1460 ProSiteProfiles TIR domain profile. 6 178 IPR000157 GO:0007165
Gabi1333g00001 1460 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1333g00001 Gabi-Chr1333 40449 49807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1333g00001 778 874 WRKY Transcription Factor Family AT4G12020 32.990 9.02e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1333g00001 - - cam:101515491 1482.62