Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1332g00004 ATGTCTTCTGCATCCTTTCTACTTCTCTTCCTTTGTTGCTTTGCAACTCCTGCATTTTCAGACCCAAGAGCCCAGAAAGCAGCTTTGGTGTGCACTAACAAAACTGCATCAATGCCTAATCGTCAAGTTTTCATAGCAAACTTTTTGGGTGCCATTGATTCGTTGACCTCTATGATTTCAAGACAAAGATATGGAGCTGTTGTTAATGGGACACAGAACTTAACTGTGTATGCTTTTGGTGAATGCATGAAAGATCTTTCTCAATCAGATTGCAACATGTGTCTTGCACAGTGCAAGACACAGATCATTAGGTGCCTGCCATTTCAGAAAGGTACACGTGGTGGCAGGCTCTTCTTTGATGGTTGCTACCTAAGATATGATGACTACAACTTCTTCAATGAGAGTCTTAGTGACCAAGACACCACCGTTTGTGCCACCAGTGATTTTAGTGGGAATAGCAGTGTTTATGAAGCTAATGCTTTGGAGTTAGTAAGAAATTTGAGCTTTTTAGCACCAAAAAATGATGGGTTCTTTGTTGGCTCTTTGGATCGAAAGAACGTATCTGTTTATGGGTTGGCTCAGTGCTGGGAGTTTGTTAATGGCACTGCCTGCAAGAACTGTTTGCAAGATGCTGTTACTAGGATTGGTTCTTGTACAACAAAAGATGAAGGAAGAGCATTGAATGCTGGTTGTTACTTGAGGTATTCCACACAAAAGTTCTATTATAATTCTACCAATGATGTACCTGCTGGAAATCATGGACACCGGCGTATAGCTATAATTCTGGCTGCATCTTTTGCTGCCCTGGCTCTTCTGCTGGTTGCTGCAACAGTTGTTTTCTTTGTAAGGAGGAATGCACTGGCGAGGAGAAGAGAAAGAAGACATTTTGGTGCACTTTTGGACACAATGAACAAGTCCAAGCTAAATATGCCATATGAAGTTCTTGAAAAAGCTACAAACTATTTCAATAATGCCAATAAGCTAGGACAAGGTGGATCAGGTTCAGTTTATAAAGGAGTTCTGCCAGATGGAAACACAGTGGCCATAAAAAGGCTTAGCTTTACCACAACACAATGGGCAGATCATTTCTTCAATGAGGTCAATTTGATCAATGGCATTCATCACAAAAATCTTGTAAAGCTTTTGGGGTGCAGCATTACAGGACCTGAAAGCCTTCTTGTTTATGAATACATGCCTAACCAGAGCCTCCATGATCACCTTTCTGGTTTTAGAATGATTTCTCAACCGCTGACTTGGGAAGTCAGGCATAAGATCATATTAGGAATTGCAGAAGGCATGGCCTATCTTCATGAGGAATCACATGTTAGAATCATTCATAGAGACATAAAATTAAGCAACGTTCTGCTTGATGAGAACTTCGCTCCCAAGATTGCTGATTTTGGACTTGCTAGATTGTTTCCAGAAGACAAGTCTCACATTAGCACAGCCATTGCTGGAACACTGGGTTATATGGCTCCAGAATATATAGTTCGTGGAAAGTTGACTGAGAAAGCAGATGTGTACAGTTTTGGAGTTCTGCTTGTTGAAGTTGTATCTGGCAAAAGAAACAGTTCCTTTGTTGTAAATTCATCCTCTATCCTACAAATGGTTTGGAGCCTTTATGGATCAAATAGGCTCACTGAAATTGTTGATCCAACCCTAGAGGGAAATTTTCCTGTAGAGGAAGCATGCCAACTTCTTCAGATAGGGTTGCTTTGTGCACAAGCATCTGCAGAGTTGAGACCATCAATGTCAGTAGTTGTTAAAATGATTGATAACAATCATGAAATTCCTCGGCCAACGCAACCGCCATTCATTAATTCTGGTCGTTCAGAACTCATCAGATCTAGTTTACCTGGAAAAAACTTTCAGCCTGGATCCAACACACAGTCTTCAGGGGATACCATGACTGAAAGTTTGATTGAGGCTAGATGA 1935 0.4093 MSSASFLLLFLCCFATPAFSDPRAQKAALVCTNKTASMPNRQVFIANFLGAIDSLTSMISRQRYGAVVNGTQNLTVYAFGECMKDLSQSDCNMCLAQCKTQIIRCLPFQKGTRGGRLFFDGCYLRYDDYNFFNESLSDQDTTVCATSDFSGNSSVYEANALELVRNLSFLAPKNDGFFVGSLDRKNVSVYGLAQCWEFVNGTACKNCLQDAVTRIGSCTTKDEGRALNAGCYLRYSTQKFYYNSTNDVPAGNHGHRRIAIILAASFAALALLLVAATVVFFVRRNALARRRERRHFGALLDTMNKSKLNMPYEVLEKATNYFNNANKLGQGGSGSVYKGVLPDGNTVAIKRLSFTTTQWADHFFNEVNLINGIHHKNLVKLLGCSITGPESLLVYEYMPNQSLHDHLSGFRMISQPLTWEVRHKIILGIAEGMAYLHEESHVRIIHRDIKLSNVLLDENFAPKIADFGLARLFPEDKSHISTAIAGTLGYMAPEYIVRGKLTEKADVYSFGVLLVEVVSGKRNSSFVVNSSSILQMVWSLYGSNRLTEIVDPTLEGNFPVEEACQLLQIGLLCAQASAELRPSMSVVVKMIDNNHEIPRPTQPPFINSGRSELIRSSLPGKNFQPGSNTQSSGDTMTESLIEAR 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1332g00004 644 Pfam Salt stress response/antifungal 31 129 IPR002902 -
Gabi1332g00004 644 Pfam Salt stress response/antifungal 144 237 IPR002902 -
Gabi1332g00004 644 Gene3D - 138 240 IPR038408 -
Gabi1332g00004 644 Gene3D - 25 131 IPR038408 -
Gabi1332g00004 644 FunFam Cysteine-rich receptor-like protein kinase 3 140 240 - -
Gabi1332g00004 644 SUPERFAMILY Protein kinase-like (PK-like) 308 618 IPR011009 -
Gabi1332g00004 644 Pfam Protein kinase domain 323 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1332g00004 644 Gene3D Transferase(Phosphotransferase) domain 1 398 600 - -
Gabi1332g00004 644 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Gabi1332g00004 644 MobiDBLite consensus disorder prediction 617 638 - -
Gabi1332g00004 644 ProSiteProfiles Protein kinase domain profile. 322 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1332g00004 644 MobiDBLite consensus disorder prediction 617 644 - -
Gabi1332g00004 644 CDD STKc_IRAK 328 593 - -
Gabi1332g00004 644 FunFam Cysteine-rich receptor-like protein kinase 2 24 131 - -
Gabi1332g00004 644 ProSiteProfiles Gnk2-homologous domain profile. 137 240 IPR002902 -
Gabi1332g00004 644 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 77 627 - -
Gabi1332g00004 644 FunFam Cysteine-rich receptor-like protein kinase 2 288 397 - -
Gabi1332g00004 644 Gene3D Phosphorylase Kinase; domain 1 283 397 - -
Gabi1332g00004 644 SMART serkin_6 322 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1332g00004 644 ProSiteProfiles Gnk2-homologous domain profile. 26 131 IPR002902 -
Gabi1332g00004 644 FunFam Cysteine-rich receptor-like protein kinase 2 398 599 - -
Gabi1332g00004 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1332g00004 Gabi-Chr1332 84444 87815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1332g00004 16 488 Receptor kinase-like Gene Family AT1G70530 59.705 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1332g00004 Pkinase 4.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1332g00004 - - gmx:100305402 980.704