Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1332g00003 ATGAGATATCATGGAGAACTTCAATTGAATTCATTTCAGGCCTTAAATGCACAGCACAGTTCCTTGTTGAGAAGCACAACTAAGAGCACTAGAGGAAGTGATTCAGATTCCATCATATCAAAAATGGAGAAATTAGTCTCTCTTGTCCATTCTCAATGCCTTGTTTTCCTTCTCATGAAGTATCTATTACTATCAGAAACAGTAATGGCAGAACCAAGGGCTAAGACAGTAAAAATAATATGTGGCAATCAGCTAGAGCACAACACAACTATCTTTGTTCCGAATTTTGTTGCAACTATGGAGAATATCAGTGAACAGATGCGCAGCACAGGATATGGCACAGCAGTTTCAGGGACAGGACCTGACATTAACTATGGTCTGGCTCAGTGCTATGGAGATCTTTCATTACTAGACTGTGTGTTGTGTTATGCAGAGGCGCGAACGGTTCTTCCCCAATGCTTCCCTTACAATGGAGGTCGTATTTACCTTGATGGTTGCTTCATGAGGGCTGAAAACTATAGTTTCTATAATGAGTATATAGGTTCTGGAGATGAAGCTGTTTGTGGAAACACAACAAAGAAGAACTCGAGTTTTCAAACAGCAGCAAAGAGTGCTGTTTTGAGTGCTGTTCAAGTTGCAACACTCAACAATATAGGCTATGCAAGGGAGAAGGTTGTTGTATCAGGAACAGCTAATGAGTCAGCTTATGTTCTGGCTGATTGTTGGAGGAGTTTGAACACAAGCTCTTGCAAAGCATGTCTTGAGAATGCATCTTCTTCGATATTGGGATGCTTGCCCTGGTCAGAAGGGCGAGCACTGAACACTGGATGCTTCATGAGGTACTCAGACACAGATTTTCTTAATAAGGAACAGGATAATGGAAGTTCAAGAGGTAATGTAGTAGTGATAGTGGTTGCAGTAGTCAGTGCAGTGATTGTTTTGGTGATTGGAATAGCTATTGGGGTTTATATCCGCAAACACAGATATATTCAAAAGAAACGAAGAGGTTCAAATGATGCAGAAAAGTTAGCCAACACCCTTCACCACAATAGCTTGAACTTCAAGTACTCTACACTGGAGAAGGCTACTGAATCTTTTGATGAAGCTAAAAAGATTGGACAAGGAGGATTTGGAACGGTTTATAAAGGAGTTCTGCCTGATGGAAGAGAGATTGCTATCAAGAGGTTATATTTCAACAACAGACATAGAGCAGCAGATTTCTACAATGAAGTCAACATAATCAGTAGTGTGGAACACAAGAATCTAGTTAGACTGTTAGGGTGCAGTTGTTCAGGACCTGAAAGCCTTCTTGTATATGAATTTCTACCCAACAAAAGTCTTGATCGCTTCATATTTGATAAAAACAAGGGTAGACAACTAAACTGGGAGAAGAGATATGACATTATCATTGGGACAGCTGAAGGATTGGTCTACCTGCATGAGAGCTCCAAAATTAGGATAATTCACAGAGATATAAAAGCCAGCAACATCTTATTGGATGCAAAACTTCGTGCTAAGATTGCAGATTTTGGTTTGGCTAGGTCCTTTCAAGAAGATAAGAGCCACATCAGTACAGCTATTGCGGGAACTTTGGGTTATATGGCTCCAGAGTATCTAGCACATGGTCAGTTAACAGAGAAAGCAGACATATATAGTTTTGGAGTGTTACTGCTAGAAATAGTTACTGGGAGACAGAACAACATGAGCAAAACATCAGACTATTTAGATAGCCTAGTTACATTGACATGGAAGCATTTTCAGTCAGGGACTACAGAACAATTATTTGATCGAAATCTAGTGTCGAACGACAACCACAGTAGCCATGTTAAGAATGAGATGTTAAGAGTGGTGCACATAGGACTTCTATGCACCCAAGAAATCCCCTCATTACGACCAACTATGTCAAAGGCACTACAGATGCTAACAAAGAAGGAAGAGCACCTTGCAGCTCCCTCTAATCCACCCTTCATTGATGAAAGTACCATGGAACTTCATGGCAATAGTGACGACCCATTTTTACCTCTCAATGCAGCAGATTCAATAGCTACTATTTCCCATAGCTCTTTTTATCCGAGGTAA 2079 0.404 MRYHGELQLNSFQALNAQHSSLLRSTTKSTRGSDSDSIISKMEKLVSLVHSQCLVFLLMKYLLLSETVMAEPRAKTVKIICGNQLEHNTTIFVPNFVATMENISEQMRSTGYGTAVSGTGPDINYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNGGRIYLDGCFMRAENYSFYNEYIGSGDEAVCGNTTKKNSSFQTAAKSAVLSAVQVATLNNIGYAREKVVVSGTANESAYVLADCWRSLNTSSCKACLENASSSILGCLPWSEGRALNTGCFMRYSDTDFLNKEQDNGSSRGNVVVIVVAVVSAVIVLVIGIAIGVYIRKHRYIQKKRRGSNDAEKLANTLHHNSLNFKYSTLEKATESFDEAKKIGQGGFGTVYKGVLPDGREIAIKRLYFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDKNKGRQLNWEKRYDIIIGTAEGLVYLHESSKIRIIHRDIKASNILLDAKLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADIYSFGVLLLEIVTGRQNNMSKTSDYLDSLVTLTWKHFQSGTTEQLFDRNLVSNDNHSSHVKNEMLRVVHIGLLCTQEIPSLRPTMSKALQMLTKKEEHLAAPSNPPFIDESTMELHGNSDDPFLPLNAADSIATISHSSFYPR 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1332g00003 692 FunFam Cysteine-rich receptor-like protein kinase 2 442 649 - -
Gabi1332g00003 692 FunFam Cysteine-rich receptor-like protein kinase 3 184 286 - -
Gabi1332g00003 692 SMART serkin_6 366 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1332g00003 692 Pfam Salt stress response/antifungal 188 283 IPR002902 -
Gabi1332g00003 692 Pfam Salt stress response/antifungal 89 173 IPR002902 -
Gabi1332g00003 692 Gene3D Phosphorylase Kinase; domain 1 326 441 - -
Gabi1332g00003 692 ProSitePatterns Protein kinases ATP-binding region signature. 372 394 IPR017441 GO:0005524
Gabi1332g00003 692 ProSiteProfiles Gnk2-homologous domain profile. 74 175 IPR002902 -
Gabi1332g00003 692 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 125 663 - -
Gabi1332g00003 692 Gene3D - 185 286 IPR038408 -
Gabi1332g00003 692 Gene3D - 74 175 IPR038408 -
Gabi1332g00003 692 FunFam Putative DUF26-domain receptor-like protein kinase family protein 334 441 - -
Gabi1332g00003 692 SUPERFAMILY Protein kinase-like (PK-like) 350 662 IPR011009 -
Gabi1332g00003 692 Gene3D Transferase(Phosphotransferase) domain 1 442 653 - -
Gabi1332g00003 692 FunFam Cysteine-rich receptor-like protein kinase 2 74 175 - -
Gabi1332g00003 692 CDD STKc_IRAK 372 643 - -
Gabi1332g00003 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Gabi1332g00003 692 ProSiteProfiles Gnk2-homologous domain profile. 180 286 IPR002902 -
Gabi1332g00003 692 Pfam Protein tyrosine and serine/threonine kinase 369 639 IPR001245 GO:0004672|GO:0006468
Gabi1332g00003 692 ProSiteProfiles Protein kinase domain profile. 366 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1332g00003 Gabi-Chr1332 78851 82306 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1332g00003 53 692 Receptor kinase-like Gene Family AT1G70520 68.224 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1332g00003 PK_Tyr_Ser-Thr 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1332g00003 - - gmx:100818343 1091.64