Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1332g00002 ATGGAGGAGCAAATGTACGGAGTGCCGTCGACGGCGGAGTACTCAGACGAGGCGTTGATGACACCGGATAATTTGATATACCCGGCGGAATACAACAGCTTCCTGATGTCTTCCTTCGGTCGGATTCCGATATTCGGATCCGACGAGTTGCTCTCCGCCGCCGCAGTCACCGTCGCCGCCGAACCCTCGTCCAACAATATCACTCCCGAAATTCAGCGCCACCACTACACCTCCTGCGTCACCAAAGCCAAAATCGCTTCTCACCCTCACTACCCTCGCCTCCTCCAAGCTTACATCGATTGCCAAAAGTTGGGAGCGCCACCAGAAATTGCGTGTTTGTTGGACGAAATCCGGCGAGAAAATGATCTGTGCACGAAGCACGTGGTTTCCACGTGCTTTGGATCCGATCCCGAGCTCGACGATTTCATGGAAACCTATTGTGACATGCTGGTGAAATATAAATCTGATCTGACGCGGCCGTTTCACGAAGCAACTACCTTCCTTAACAAGATCGAAACGCAGCTCAGCGATCTCTGCACTGGTGCTTCCGTTACAACCGTTTCCGATGATGCGGGTGTATCTTCGGAAGAGGGTTTTAGTACTGGAGATGGTGATACTGAATATGGTAAATTCCGGGGTGAAGATCCAGAGCTGAAGGATAGGCTTTTACATAAGTTTGGAAGTCATATTGGTAATTTGAAATTGGAGTTTTCAAAGAAGAAAAAGAGAGGTAGGCTATCGAAAGACGCCAGGCAAACACTGCTTCAATGGTGGAATGTTCACTACAGATGGCCTTACCCAACGGAAGGTGATAAGATTGCACTGGCTAAGTCAACTGGGCTAGACCAGAAGCAAATCAATAATTGGTTTATTAATCAAAGAAAGCGTTACTGGAATCCATCTGAGAATATGCAGTTTTGTATGATGGATAATCTGACCGGACGGTTACTTACTGATGAATGA 963 0.4787 MEEQMYGVPSTAEYSDEALMTPDNLIYPAEYNSFLMSSFGRIPIFGSDELLSAAAVTVAAEPSSNNITPEIQRHHYTSCVTKAKIASHPHYPRLLQAYIDCQKLGAPPEIACLLDEIRRENDLCTKHVVSTCFGSDPELDDFMETYCDMLVKYKSDLTRPFHEATTFLNKIETQLSDLCTGASVTTVSDDAGVSSEEGFSTGDGDTEYGKFRGEDPELKDRLLHKFGSHIGNLKLEFSKKKKRGRLSKDARQTLLQWWNVHYRWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRYWNPSENMQFCMMDNLTGRLLTDE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1332g00002 320 ProSiteProfiles ELK domain profile. 217 237 IPR005539 GO:0003677
Gabi1332g00002 320 Gene3D - 236 307 - -
Gabi1332g00002 320 Pfam KNOX2 domain 133 179 IPR005541 GO:0003677|GO:0005634
Gabi1332g00002 320 Pfam KNOX1 domain 82 122 IPR005540 GO:0003677|GO:0005634
Gabi1332g00002 320 SMART ELK_2 217 238 IPR005539 GO:0003677
Gabi1332g00002 320 SMART HOX_1 239 304 IPR001356 GO:0003677
Gabi1332g00002 320 Pfam Homeobox KN domain 257 296 IPR008422 GO:0003677|GO:0006355
Gabi1332g00002 320 Pfam ELK domain 217 238 IPR005539 GO:0003677
Gabi1332g00002 320 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 306 - -
Gabi1332g00002 320 SMART KNOX2_2 129 180 IPR005541 GO:0003677|GO:0005634
Gabi1332g00002 320 SMART KNOX1_2 79 123 IPR005540 GO:0003677|GO:0005634
Gabi1332g00002 320 ProSiteProfiles 'Homeobox' domain profile. 237 300 IPR001356 GO:0003677
Gabi1332g00002 320 CDD homeodomain 240 301 IPR001356 GO:0003677
Gabi1332g00002 320 SUPERFAMILY Homeodomain-like 238 311 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1332g00002 Gabi-Chr1332 40938 49127 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1332g00002 5 320 Homeobox Transcription Factor Family AT1G23380 62.195 1.62e-136 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi1332g00002 KNOX2 2.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1332g00002 - - gmx:100803730 507.679