Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1327g00004 ATGGGTGGTGACAGTGCCGTCGAGGAAGCGACGGAATCGAAGGGCGCAGAAGGGGTCAACATCAACGTTCGCTGCTCCAATGGTTCCAAATTTTCGGTTCAGATTGCCCTCGAATCCACCGTCGGATCCTTTAAGGATGTTGTCGCTCGGAACTGCGACATCCCCGCCGACCAACAGCGACTGATTTACAAGGGTCGGATCTTGAAGGACGATCAAACCCTGCAAAGCTACGGTTTGGATGCAGATCACACAGTGCATTTGGTTCGTGGCTTTGCACCTGCCAATACAACTGGTGGGACCAATACTAGTGGCACCAATACCACAACGAATAATGCCAGAGGTGCTGGTACTAATGATGATGGGGGTTTGGGAGGGCTTGGTTTTGGAGCTTCACTGTTCCCTGGACTGGGTATCAATGGGAGTGGGGGCAATGGCTTATTTGGCGAGGGCTTTCCTGATCTTGAGCAAATGCAGCAACCATTTATTTCGAATCCCAATTTAGTGAGAGAAATAATGAACACACCTGCTATGCAGAATTTAATAAATAATCCCGAGATAGTGCGGAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCTCACATACTTAATGATCCCAGCACTCTCCGCCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCACTTTTAAATGCCACTACAATGGCTGGTAATACAGGAAATAATGCCGCAATGTCAGGGACTCATGGTGGCCAAGCCAGGGACCAATCAACTAATCCCTCAACTACTAGTTCTGAAGCAACTGCTGGTTCTCCCTTACCCAATACTAACCCGCTTCCTAATCCTTGGTCCTCTACTGCAACTGGAGGTGCCCAAAATAATACTAGAAGGTCAACCACTGGTGGGGATGCTAGGCAGCAAGCACCTAGTGGCTTGGGAGGACTAGGTATGCCAGACCTTGAAGGCATGCTGGGTGGCAGTGCAATGCCAGATGCTGCTTTATTGACCCAGCTAATGCAAAATCCGGCCATCTCACAAATGATGCAAAGTATCCTTTCAAACCCGCAAACTTTGAATCAGATTCTTGGTGTTAATACTGAACAGCGTGGCATGCCTGATTTAAATTCGCTAAGAGAAGTAATGCAAAATCCAGAGTTTCTTCGCTTGTTTTCTTCACCTGAGACATTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTTCTGTCTCAACTTGGTCAGCAGCAATCAACACGGGAATCGGGTCAAACTGGTGGAGGCCCTGAGCCACCAGAGCAATTGTATGCCACCCAGCTTTCACAGCTTCAAGAGATGGGATTTTTTGACACGCAAGAGAACATAAGGGCTCTCACTGCGACTTCTGGGAATGTTCATGCTGCAGTTGAACGGCTTTTGGGGAACTCTGGTCAATAG 1536 0.4772 MGGDSAVEEATESKGAEGVNINVRCSNGSKFSVQIALESTVGSFKDVVARNCDIPADQQRLIYKGRILKDDQTLQSYGLDADHTVHLVRGFAPANTTGGTNTSGTNTTTNNARGAGTNDDGGLGGLGFGASLFPGLGINGSGGNGLFGEGFPDLEQMQQPFISNPNLVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPLLNATTMAGNTGNNAAMSGTHGGQARDQSTNPSTTSSEATAGSPLPNTNPLPNPWSSTATGGAQNNTRRSTTGGDARQQAPSGLGGLGMPDLEGMLGGSAMPDAALLTQLMQNPAISQMMQSILSNPQTLNQILGVNTEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTRESGQTGGGPEPPEQLYATQLSQLQEMGFFDTQENIRALTATSGNVHAAVERLLGNSGQ 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1327g00004 511 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Gabi1327g00004 511 SMART uba_6 469 507 IPR015940 -
Gabi1327g00004 511 SMART CBM 353 397 IPR006636 -
Gabi1327g00004 511 SMART CBM 400 435 IPR006636 -
Gabi1327g00004 511 SMART CBM 194 233 IPR006636 -
Gabi1327g00004 511 SMART CBM 144 181 IPR006636 -
Gabi1327g00004 511 FunFam Ubiquitin domain-containing protein DSK2b 191 247 - -
Gabi1327g00004 511 PANTHER UBIQUILIN 14 506 IPR015496 -
Gabi1327g00004 511 CDD Ubl_Dsk2p_like 19 91 - -
Gabi1327g00004 511 SUPERFAMILY Ubiquitin-like 12 105 IPR029071 -
Gabi1327g00004 511 CDD UBA_PLICs 469 507 - -
Gabi1327g00004 511 MobiDBLite consensus disorder prediction 269 342 - -
Gabi1327g00004 511 Gene3D - 189 247 - -
Gabi1327g00004 511 SMART ubq_7 19 90 IPR000626 GO:0005515
Gabi1327g00004 511 MobiDBLite consensus disorder prediction 446 466 - -
Gabi1327g00004 511 FunFam Ubiquitin family protein 451 510 - -
Gabi1327g00004 511 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Gabi1327g00004 511 Gene3D - 461 509 - -
Gabi1327g00004 511 Pfam UBA/TS-N domain 469 505 IPR015940 -
Gabi1327g00004 511 SUPERFAMILY UBA-like 465 507 IPR009060 GO:0005515
Gabi1327g00004 511 MobiDBLite consensus disorder prediction 269 360 - -
Gabi1327g00004 511 Gene3D - 6 104 - -
Gabi1327g00004 511 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 463 508 IPR015940 -
Gabi1327g00004 511 FunFam Ubiquitin domain-containing protein DSK2b 16 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1327g00004 Gabi-Chr1327 58235 66257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1327g00004 19 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 2.30e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1327g00004 K04523 - gmx:100776447 792.727