Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1327g00003 ATGGGTGGTGACAGTGCCGTCGAGGAAGCGACGGAATCGAAGGGCGCAGAAGGGGTCAACATCAACGTTCGCTGCTCCAATGGTTCCAAATTTTCGGTTCAGATTGCCCTCGAATCCACCGTCGGATCCTTTAAGGATGTTGTCGCTCGGAACTGCGACATCCCCGCCGACCAACAGCGACTGATTTACAAGGGTCGGATCTTGAAGGACGATCAAACCCTGCAAAGCTACGGTTTGGATGCAGATCACACAGTGCATTTGGTTCGTGGCTTTGCACCTGCCAATACAACTGGTGGGACCAATACTAGTGGCACCAATACCACAACGAATAATGCCAGAGGTGCTGGTACTAATGATGATGGGGGTTTGGGAGGGCTTGGTTTTGGAGCTTCACTGTTCCCTGGACTGGGTATCAATGGGAGTGGGGGCAATGGCTTATTTGGCGAGGGCTTTCCTGATCTTGAGCAAATGCAGCAACCATTTATTTCGAATCCCAATTTAGTGAGAGAAATAATGAACACACCTGCTATGCAGAATTTAATAAATAATCCCGAGATAGTGCGGAATCTTATAATGAATAACCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCTCACATACTTAATGATCCCAGCACTCTCCGCCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCACTTTTAAATGCCACTACAATGGCTGGTAATACAGGAAATAATGCCGCAATGTCAGGGACTCATGGTGGCCAAGCCAGGGACCAATCAACTAATCCCTCAACTACTAGTTCTGAAGCAACTGCTGGTTCTCCCTTACCCAATACTAACCCGCTTCCTAATCCTTGGTCCTCTACTGCAACTGGAGGTGCCCAAAATAATACTAGAAGGTCAACCACTGGTGGGGATGCTAGGCAGCAAGCACCTAGTGGCTTGGGAGGACTAGGTATGCCAGACCTTGAAGGCATGCTGGGTGGCAGTGCAATGCCAGATGCTGCTTTATTGACCCAGCTAATGCAAAATCCGGCCATCTCACAAATGATGCAAAGTATCCTTTCAAACCCGCAAACTTTGAATCAGATTCTTGGTGTTAATACTGAACAGCGTGGCATGCCTGATTTAAATTCGCTAAGAGAAGTAATGCAAAATCCAGAGTTTCTTCGCTTGTTTTCTTCACCTGAGACATTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTTCTGTCTCAACTTGGTCAGCAGCAATCAACACGGGAATCGGGTCAAACTGGTGGAGGCCCTGGATCGTTGAACAACATGGGTTTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCACCAGAGCAATTGTATGCCACCCAGCTTTCACAGCTTCAAGAGATGGGATTTTTTGACACGCAAGAGAACATAAGGGCTCTCACTGCGACTTCTGGGAATGTTCATGCTGCAGTTGAACGGCTTTTGGGGAACTCTGGTCAATAG 1626 0.4754 MGGDSAVEEATESKGAEGVNINVRCSNGSKFSVQIALESTVGSFKDVVARNCDIPADQQRLIYKGRILKDDQTLQSYGLDADHTVHLVRGFAPANTTGGTNTSGTNTTTNNARGAGTNDDGGLGGLGFGASLFPGLGINGSGGNGLFGEGFPDLEQMQQPFISNPNLVREIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPLLNATTMAGNTGNNAAMSGTHGGQARDQSTNPSTTSSEATAGSPLPNTNPLPNPWSSTATGGAQNNTRRSTTGGDARQQAPSGLGGLGMPDLEGMLGGSAMPDAALLTQLMQNPAISQMMQSILSNPQTLNQILGVNTEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQLGQQQSTRESGQTGGGPGSLNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALTATSGNVHAAVERLLGNSGQ 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1327g00003 541 MobiDBLite consensus disorder prediction 447 468 - -
Gabi1327g00003 541 SMART CBM 353 397 IPR006636 -
Gabi1327g00003 541 SMART CBM 400 435 IPR006636 -
Gabi1327g00003 541 SMART CBM 194 233 IPR006636 -
Gabi1327g00003 541 SMART CBM 144 181 IPR006636 -
Gabi1327g00003 541 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 493 538 IPR015940 -
Gabi1327g00003 541 CDD Ubl_Dsk2p_like 19 91 - -
Gabi1327g00003 541 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Gabi1327g00003 541 MobiDBLite consensus disorder prediction 269 342 - -
Gabi1327g00003 541 SMART ubq_7 19 90 IPR000626 GO:0005515
Gabi1327g00003 541 SUPERFAMILY Ubiquitin-like 12 105 IPR029071 -
Gabi1327g00003 541 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Gabi1327g00003 541 Pfam UBA/TS-N domain 499 535 IPR015940 -
Gabi1327g00003 541 Gene3D - 189 247 - -
Gabi1327g00003 541 SMART uba_6 499 537 IPR015940 -
Gabi1327g00003 541 MobiDBLite consensus disorder prediction 269 360 - -
Gabi1327g00003 541 FunFam Ubiquitin domain-containing protein DSK2b 482 540 - -
Gabi1327g00003 541 CDD UBA_PLICs 499 537 - -
Gabi1327g00003 541 Gene3D - 481 541 - -
Gabi1327g00003 541 PANTHER UBIQUILIN 14 536 IPR015496 -
Gabi1327g00003 541 Gene3D - 6 104 - -
Gabi1327g00003 541 SUPERFAMILY UBA-like 495 537 IPR009060 GO:0005515
Gabi1327g00003 541 FunFam Ubiquitin domain-containing protein DSK2b 191 247 - -
Gabi1327g00003 541 FunFam Ubiquitin domain-containing protein DSK2b 16 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1327g00003 Gabi-Chr1327 58235 66257 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1327g00003 19 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 2.10e-07 48.5