Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1327g00002 ATGATTGAATGCAAGGAAACAAATGAACAAATCTTAATTCCTGTTTTCTACAATGTTGATCCATCTTATGTGCGGCACCAACGTGGAGAATACGGAGATGCCTTAGCTAAACATGAAGAAAATTTCAAGGAGGCACAAAGTTTGAGATCTGCTTTGAAGAAAGCGAGTTTATTATCAGGGTTTCATTATCCCAAGAATTTTGAGAATGAATCTGATCTCGTTGATGAAATTGTGGAAGATGTTTTGGAAAAACTAATCAAGTTTTGCCCAAGTGAATCAAATGGTCTTGTTGGAATTGATCAAAATATTGCACAGATTCAATCCTTATTGATACTGGATTCAAGAGAAGTTATATTTCTTGGAATTTGGGGCATGGTTGGCATAGGTAAGACAGCCATTGCTCGTGCTGTATTTGATAAATATTCTCCTCAATATGATGGTTGCTGCTTCTTGAATGTAAGAGAAGAATTGGAACAATGTGGATTGAGTTTTTTACGTGTAAAACTTCTTTCTGAACTATTGGATGGAGAAAATCTACGTAGAAATGGCACAAGCAAAGCAAGATATGTTGAGAAAAGGTTGAGTCGGAAAAAAGTTTTCATTGTGCTGGATGATGTGCATAGTTCAGAACAACTAAAATATCTGGTTGGTGAATCAGTTTGCTTTGGACCAGGGAGTAGAGTGATCGTAACAAGTAGAGATAAGCATGAACTTGTTAGTGGAGGAGTTCATCAAATACATGAGGTCAAGGAAATGGACTTTCAAGATTCCCTTAAACTCTTCTGCTTAAATGCCTTCAATGAAAGCCAGCCCAAAATGGGATATGAAAAGCTATCTAAAAAAGTAGTTGATTATGCCAAGGGCAATCCATTAGCTTTAAAAGTTTTGGGTTCAGATTTCCATTCCAGAAGTGAAGATACATGGAAGTGTGCACTAAGAAAACTCAAGAAGTATCCCAATGAGAAAATTCAAAGTCTGTTGAGATTCAGTTATGATGGACTACATGAAGTAGAGAAAAATGCTTTTCTAGATATTGCATTCTTTTTCAAAGAAGAAGACAAAGATTATGTCATAAGGCTCCTAGATGCTTGGGGTTTCTATGGAGCTAGTGGAATAGAGGCTCTCCAACGGAAAGCTCTTATAACTATTTCAAATGACAATAGAATACAAATGCATGATTGGATACAAGAAATGGGTTGTGAAATAGTTCGTCAAGAATCTATCAAATATCCTGAAAGACGCAGCCGATTGAGGGATAACGAGGAGGTCTATGCTGTATTGAGAAATAACCAGGGAACTGATGAGATGGAGGCCATCCAAATAGATGTTTCTCAAATTAGAGATTTAACCTTGAGTATTGACACTTTTCGAAAGATGCGTCGTCTAAGATTTCTCAAACTTTATTACCCTTTGCATGTTGAGCTTTCTATGCCGCCAAGCCACAATCATCCATATATTTTGTCTCTCCAACAACAAGTTGCTTTGATTCTATCTGGGTGCAAAGAACTCATGAGCATTGGAAGTGAGATTCATATAAAATGTCTTCATTACCTTCTTATCGATGGATGCTCAGGTTCCAAGGAATCTTCAGTGTTACCAAAGGAAATAAGGCAGCAAAACTTAACAAACCCTGGAATGGACATGTTGAACTCATCCATTGGGCACCTCAACAATATTGAATGGTCAGATAGGAATGGTATACAATTTAAGAATCTACCCAACGAGTTATTTTGCATGAGATCAGTGTATTACCTAAGGCATTCTAAGAGCAGAGGACAAGACAGTGGGAAACCCAAGCTACATATTCTATTTGATGGGTTAAGCTATTCTCAACGTATATCTTTGAAAGAGTTGTATGACTTACGTGAACTAGCACTTCCTCAGAATATCAGTGCTTTTTCTTCTAGAAAATCGACACTTGATGGAAGCATCGTGGAGAGCTTGCCTCGGTTCATCATTCAATCGCTGGATGCTTTGTTAAATGAAAGCTACAAGGTCTTTCGCTAA 2007 0.3742 MIECKETNEQILIPVFYNVDPSYVRHQRGEYGDALAKHEENFKEAQSLRSALKKASLLSGFHYPKNFENESDLVDEIVEDVLEKLIKFCPSESNGLVGIDQNIAQIQSLLILDSREVIFLGIWGMVGIGKTAIARAVFDKYSPQYDGCCFLNVREELEQCGLSFLRVKLLSELLDGENLRRNGTSKARYVEKRLSRKKVFIVLDDVHSSEQLKYLVGESVCFGPGSRVIVTSRDKHELVSGGVHQIHEVKEMDFQDSLKLFCLNAFNESQPKMGYEKLSKKVVDYAKGNPLALKVLGSDFHSRSEDTWKCALRKLKKYPNEKIQSLLRFSYDGLHEVEKNAFLDIAFFFKEEDKDYVIRLLDAWGFYGASGIEALQRKALITISNDNRIQMHDWIQEMGCEIVRQESIKYPERRSRLRDNEEVYAVLRNNQGTDEMEAIQIDVSQIRDLTLSIDTFRKMRRLRFLKLYYPLHVELSMPPSHNHPYILSLQQQVALILSGCKELMSIGSEIHIKCLHYLLIDGCSGSKESSVLPKEIRQQNLTNPGMDMLNSSIGHLNNIEWSDRNGIQFKNLPNELFCMRSVYYLRHSKSRGQDSGKPKLHILFDGLSYSQRISLKELYDLRELALPQNISAFSSRKSTLDGSIVESLPRFIIQSLDALLNESYKVFR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1327g00002 668 Gene3D - 252 335 IPR042197 -
Gabi1327g00002 668 Pfam TIR domain 2 96 IPR000157 GO:0007165
Gabi1327g00002 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 345 IPR027417 -
Gabi1327g00002 668 Gene3D - 1 84 IPR035897 -
Gabi1327g00002 668 ProSiteProfiles TIR domain profile. 1 85 IPR000157 GO:0007165
Gabi1327g00002 668 FunFam Disease resistance protein (TIR-NBS-LRR class) 253 335 - -
Gabi1327g00002 668 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 607 IPR044974 GO:0006952
Gabi1327g00002 668 SUPERFAMILY "Winged helix" DNA-binding domain 322 423 IPR036390 -
Gabi1327g00002 668 Coils Coil 35 55 - -
Gabi1327g00002 668 Pfam NB-ARC domain 101 332 IPR002182 GO:0043531
Gabi1327g00002 668 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 60 IPR035897 -
Gabi1327g00002 668 Gene3D - 85 241 IPR027417 -
Gabi1327g00002 668 PRINTS Disease resistance protein signature 286 300 - -
Gabi1327g00002 668 PRINTS Disease resistance protein signature 193 207 - -
Gabi1327g00002 668 PRINTS Disease resistance protein signature 487 503 - -
Gabi1327g00002 668 PRINTS Disease resistance protein signature 119 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1327g00002 Gabi-Chr1327 34536 44122 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1327g00002 1 468 WRKY Transcription Factor Family AT4G12020 34.810 1.07e-68 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1327g00002 - - gmx:100305455 834.328