Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1321g00011 ATGGTGAAGCCGAGCGTGGAAAAAACAGCGTCAGAGAGAAGCGATTCTAAGTACAAAGGAGTAAGGAAGAGGAATTGGGGCAAATGGGTATCCGAAATCAGACTACCCAACAGCCGCCAGAGGATTTGGTTGGGTTCCTATGACACCGCAGAGAAGGCAGCGCGTGCCTTCGACGCTGCCACGTTTTGCTTACGTGGCAACCGTGCTAAGTTTAATTTCCCCGGTGACCCGCCTGAGATCGCCGGCGGAAGGTCCATGACCCCCTCTCAAATTCAGGCCGCTGCCGCCCGTTTCGCTAATTCGGAGCTCCCGAAGGAGTATTCGGGTCAACCCGTTACCACTCCGGTGGAATCTTATTCTTCTAATTCGTTGCTGTTGTTGCCTATGGAGTCGCCGTCTCCTCCTCTTTCTGAGGTGACTGTACAGACGGAAAGTGACATCACGTCGTTTCTGGATTTGTTTTCTATATTCGGGTCGGATAATTTTGAACCCGACTACTCTGTGTTTCCGGGTTTTGATGATTTTGGCGGCGATTTCTATGTGCCCGAGATGCCAAGTTTTGATTATGGAGAAGAGAACATGGATGGGTTGATAATTCAGGACTCGTTCTTGTGGAATTTCTAA 624 0.5 MVKPSVEKTASERSDSKYKGVRKRNWGKWVSEIRLPNSRQRIWLGSYDTAEKAARAFDAATFCLRGNRAKFNFPGDPPEIAGGRSMTPSQIQAAAARFANSELPKEYSGQPVTTPVESYSSNSLLLLPMESPSPPLSEVTVQTESDITSFLDLFSIFGSDNFEPDYSVFPGFDDFGGDFYVPEMPSFDYGEENMDGLIIQDSFLWNF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1321g00011 207 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Gabi1321g00011 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 120 - -
Gabi1321g00011 207 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Gabi1321g00011 207 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
Gabi1321g00011 207 MobiDBLite consensus disorder prediction 1 20 - -
Gabi1321g00011 207 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Gabi1321g00011 207 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Gabi1321g00011 207 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Gabi1321g00011 207 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
Gabi1321g00011 207 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Gabi1321g00011 207 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1321g00011 Gabi-Chr1321 133944 134848 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1321g00011 16 207 AP2-EREBP Transcription Factor Family AT1G19210 51.244 1.55e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1321g00011 AP2 8.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1321g00011 - - qsa:O6P43_022515 256.914