Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1321g00008 ATGGCCACCGTTCAGCTCACAGCATCATCAATTTCAGCGAGGAACGTGACATCATTTGAAGGGCTTCGACCTTCAGCGGTTCAGTTTCCTTGTTTTGGTCGTGTTAGGATTGGTAATTTCACCCAAAGGTCCTTCCGGGGTTTGATTGTTAAAGCTGCTACTGTTGTTGCCCCCAAGTACACAGCTATTAAGCCTCTGGGTGACAGAGTACTGGTGAAAATTAAGGATGCTGAAGAGAAGAGCGAGGGTGGGATTTTGCTTCCAACTTCTGCACAATCAAAGCCTCAAGGGGGTGAGGTGGTTGCTGTTGGAGAAGGAAAGACAGTTGGGAAGAGCAAAGTGGACATTAGTGTGAAGACTGGCACACAAGTTGTGTATTCGAAGTATGCAGGTACTGAGGTGGAGTTTAATGGTACAAAGCATCTTATTATAAAGGATGATGACATTGTTGGTATCCTTGAAACCGATGATGTGAAGGATCTTAAACCCTTGAATGATAGAATCCTCATAAAGGTTGCAGAAGCTGAGGAAAAAACTGCAGGGGGCTTGTTGCTTACAGAGGCAACTAAAGAGAAACCTTCAATCGGAACAGTGATAGCGGTTGGTCCAGGGTCTGTGGATGAGGAAGGGAACAAAAAACCTTTGTCTGTTACTCCTGGGAACACAGTTTTGTACTCCAAATACGCTGGGAATGACTTCAAGGGCAAAGATGGTTCTGAATACATTACCTTGAGGGTCTCTGATGTCATGGCTGTCCTCTCTTAG 765 0.4523 MATVQLTASSISARNVTSFEGLRPSAVQFPCFGRVRIGNFTQRSFRGLIVKAATVVAPKYTAIKPLGDRVLVKIKDAEEKSEGGILLPTSAQSKPQGGEVVAVGEGKTVGKSKVDISVKTGTQVVYSKYAGTEVEFNGTKHLIIKDDDIVGILETDDVKDLKPLNDRILIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGSVDEEGNKKPLSVTPGNTVLYSKYAGNDFKGKDGSEYITLRVSDVMAVLS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1321g00008 254 SUPERFAMILY GroES-like 160 253 IPR011032 -
Gabi1321g00008 254 PIRSF Cpn21 1 254 IPR017416 GO:0006457|GO:0046914|GO:1901671
Gabi1321g00008 254 Gene3D GroES chaperonin 55 155 IPR037124 GO:0006457
Gabi1321g00008 254 Gene3D GroES chaperonin 156 254 IPR037124 GO:0006457
Gabi1321g00008 254 SMART Cpn10_2 160 253 IPR020818 GO:0005524|GO:0006457|GO:0044183
Gabi1321g00008 254 SMART Cpn10_2 62 153 IPR020818 GO:0005524|GO:0006457|GO:0044183
Gabi1321g00008 254 CDD cpn10 63 153 IPR020818 GO:0005524|GO:0006457|GO:0044183
Gabi1321g00008 254 FunFam 10 kDa chaperonin 158 254 - -
Gabi1321g00008 254 ProSitePatterns Chaperonins cpn10 signature. 161 185 IPR018369 GO:0005524|GO:0006457
Gabi1321g00008 254 Hamap Co-chaperonin GroES [groES]. 160 254 IPR020818 GO:0005524|GO:0006457|GO:0044183
Gabi1321g00008 254 PRINTS 10kDa chaperonin signature 63 78 IPR020818 GO:0005524|GO:0006457|GO:0044183
Gabi1321g00008 254 PRINTS 10kDa chaperonin signature 119 131 IPR020818 GO:0005524|GO:0006457|GO:0044183
Gabi1321g00008 254 PRINTS 10kDa chaperonin signature 85 106 IPR020818 GO:0005524|GO:0006457|GO:0044183
Gabi1321g00008 254 PRINTS 10kDa chaperonin signature 140 153 IPR020818 GO:0005524|GO:0006457|GO:0044183
Gabi1321g00008 254 CDD cpn10 161 253 IPR020818 GO:0005524|GO:0006457|GO:0044183
Gabi1321g00008 254 Hamap Co-chaperonin GroES [groES]. 62 154 IPR020818 GO:0005524|GO:0006457|GO:0044183
Gabi1321g00008 254 ProSitePatterns Chaperonins cpn10 signature. 63 87 IPR018369 GO:0005524|GO:0006457
Gabi1321g00008 254 PANTHER 10 KDA HEAT SHOCK PROTEIN 158 252 IPR020818 GO:0005524|GO:0006457|GO:0044183
Gabi1321g00008 254 FunFam 20 kDa chaperonin, chloroplastic 56 155 - -
Gabi1321g00008 254 SUPERFAMILY GroES-like 61 154 IPR011032 -
Gabi1321g00008 254 Pfam Chaperonin 10 Kd subunit 63 152 IPR020818 GO:0005524|GO:0006457|GO:0044183
Gabi1321g00008 254 Pfam Chaperonin 10 Kd subunit 161 252 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1321g00008 Gabi-Chr1321 84396 86524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1321g00008 1 254 Calmodulin-binding Proteins AT5G20720 74.219 1.07e-135 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1321g00008 K04078 - gmx:100814751 430.639