Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1321g00007 ATGAAGGCTCCTTCAAATGGTTACTTGCCTAATTCTGGTGAAGGGGAAAGGAAGACAATCAATTCAGAGTTATGGCATGCGTGTGCTGGACCGTTGGTTTCTTTACCTCCTATTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCCGACATCATACCTAGTTACCCTAACCTTCCGTCCAAGTTGATTTGCATGCTTCACAATGTTGCGCTACATGCTGATCCCGAAACTGATGAGGTCTATGCACAGATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATAATGGCTTCAGACATGGGTCTCAAACAAAGCCAACAACCTACTGAATTCTTTTGCAAAACTCTTACAGCTAGTGATACAAGCACTCATGGAGGATTTTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTCCCACCTCTGGATTTTTCAATGCAACCTCCAGCTCAGGAGATTGTTGCCAAAGATTTGCATGACACTACATGGACATTTAGACATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACAGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTGTTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCAACTTCTTTTAGGTATAAAGCGAGCTAATAGACAGCAGCCAGCACTGTCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAACAGCCCATTTACTATATTTTATAATCCAAGGGCCAGTCCCTCTGAATTTGTAATTCCATTGGCCAAGTTTAATAAGGCCATGTACACTCAAGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACTGAAGAGTCAGGAGTCCGCAGATATATGGGTACAATCACTGGTATCAGTGACTTGGATCCAGTCCGATGGAAAAATTCGCAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCAAGCAGAGTTTCGATTTGGAATATTGAACCAGTAGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAAGCAACCAGGAATGCCAGAAGATGAATCTGATATAGAAAATGCTTTCAAGAGAGCTATGCCATGGCTTGGAGATGATCTTGGCATGAAAGATGCCTCAAGTTCAATTTTTCCTGGTTTAAGTTTAGTGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCTCAATCTGGGTTTTTCCCCCCATCTATGCTTTCATCTAATACCCTGCATGGTAATCATAACACTGAGGATCCATCCAAGTTATTGAGCTTTCAAGCCCCTGTCCTCTCTGCACCAAGTCTTCAATTTAACAAATCTAATCTTTCGAACCAAATCAACCAATTGCAACAGTCCCCAATGTCATGGCCTCAGCAGCAGCAACAGCAGCAGAAGCTGCAGTCATTATTGCCAACACCATTAAACCAGCTCCAACAGCAGCAGCAGCAACAGCAGCTGCCTGGACCACAAAACCTGCAACAACCTCAGCTGCCTCAACAGAGAGCACAGCAGCCACAACAACAGCAACAGCAGCAGTCATGTCAACAGGCCATTATGACTAATGGAGCAGTTGCTTCTAACCAGATTCCAAATCAGTGTGCACAGCAACCAGTTACCTACTCTCAGCTTCAGCAACATCAATTACTCTCTGGAAGTATCTCACCCCAACAAAGTATCCAATCAGCCAGTAAGAACACGTTGCTAATGACAACCTTACCACAAGACTCACAATTTCAGCAACAGATAGATCAGCAAGCTAGTCTCTTGCAAAGGCAGCAGCAACAAACACAGTTGCAACAATCTCAATTGCAGTTATTGCAACAAAGCCTGTCACAGAGGCCATCACAGCAACCACAAATGACTCAAATGTCTCAGCAAAACAGCTCAGAGCAACAACCACAGTTACAGTTGCTACAGAAATTACAACAGCAGCAACAGCAGCAACTCCTTTCCACATCTAGCCCACTTATGCAGTCTCAGCTTCTACAGCAACAAAGCACTCACCAACAAAACCAGCAATTACCGCAGCTTCCTCTATCACAGCATCTGTCTCAACAGCTTGGCAACAATGCATTCTCGATGGAGAAGATTCTCAATGGCAACAACTTCTCTTCTTCAGCTCTGATGCAATCACAGCAGCTCCCTATGAATCAACCACAAAATACACAGAAATCACTAACTAATACTAGAGCTCCCTCTACACTTACAGATGGAGATGCGCCATCATGCTCAACTTCTCCGTCTTCTAATAACTGCCAGATATCTCCTTCAAACCTCCTGAAAAGAAATCAACAAGTAACTGCCACATTAGGGGGCCCTTTGGTAGTTGAATCCACCAATAATCTAATACAGGAGCTTCAGAGTAAGTCTGACATGCTGATAAAACATGAATTACCCAGTGTAAAAGGACCTGACCAGCAAAGGTATAAAGGGACAGTTCCTGATCAGCTGGAAGCTTCTTCTGGAACATCTTACTGTATTGATCCCGGTAACATCCACCAGAACTTCTCACTTCCCAACTTCTGCATGGATGGGGATGTCCAATCACACCCTAGAAACAATCTACCATTTGCCTCTAATCTTGATGGATTAACACCTGATAATTTGCTTTCAAGGGGGTATGACTCTCAAAAAGATCTTCAAAACTTGCTGTCTAATTATTGTGGTGCTCCAAGAGACATTGAAACTGAGTTGTCAACTGCTGCTATTAGTTCACAGTCATTTGGGGTGCCAAACATGCCTTTTAAGCCTGGTTGCTCAAGTGATATTGCCATGAATGATACTGGGGTTTTGAATAATGGCTTGTGGGCTAATCAGACTCAACGAATGCGGACATATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGCATTGATGTCACCCGTTACAAGGGATATGATGAACTCCGGCATGATTTGGCTCGCATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGGACTGACTGGAAACTAGTATATGTGGATCATGAAAACGACATTCTTCTTGTCGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAAATATTGTCATCTGCTGAGGTACAACAAATGAGCTTGGATGGGGATTTAGGTCAGATTCCAATCCCCAATCAAGCTTGTAGTGGGACAGAAGGTGGCAATGCATGGAGGGGACAGTATGATGAGAACACTGCTGCCTCATTTAATCGATAA 3324 0.4359 MKAPSNGYLPNSGEGERKTINSELWHACAGPLVSLPPIGSLVVYFPQGHSEQVAASMQKEADIIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAIMASDMGLKQSQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKFNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWNIEPVVTPFYICPPPFFRPKFPKQPGMPEDESDIENAFKRAMPWLGDDLGMKDASSSIFPGLSLVQWMSMQQNNQFSAAQSGFFPPSMLSSNTLHGNHNTEDPSKLLSFQAPVLSAPSLQFNKSNLSNQINQLQQSPMSWPQQQQQQQKLQSLLPTPLNQLQQQQQQQQLPGPQNLQQPQLPQQRAQQPQQQQQQQSCQQAIMTNGAVASNQIPNQCAQQPVTYSQLQQHQLLSGSISPQQSIQSASKNTLLMTTLPQDSQFQQQIDQQASLLQRQQQQTQLQQSQLQLLQQSLSQRPSQQPQMTQMSQQNSSEQQPQLQLLQKLQQQQQQQLLSTSSPLMQSQLLQQQSTHQQNQQLPQLPLSQHLSQQLGNNAFSMEKILNGNNFSSSALMQSQQLPMNQPQNTQKSLTNTRAPSTLTDGDAPSCSTSPSSNNCQISPSNLLKRNQQVTATLGGPLVVESTNNLIQELQSKSDMLIKHELPSVKGPDQQRYKGTVPDQLEASSGTSYCIDPGNIHQNFSLPNFCMDGDVQSHPRNNLPFASNLDGLTPDNLLSRGYDSQKDLQNLLSNYCGAPRDIETELSTAAISSQSFGVPNMPFKPGCSSDIAMNDTGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGQIPIPNQACSGTEGGNAWRGQYDENTAASFNR 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1321g00007 1107 Gene3D - 975 1069 - -
Gabi1321g00007 1107 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Gabi1321g00007 1107 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi1321g00007 1107 MobiDBLite consensus disorder prediction 645 674 - -
Gabi1321g00007 1107 Gene3D - 289 360 - -
Gabi1321g00007 1107 Gene3D - 123 227 IPR015300 -
Gabi1321g00007 1107 MobiDBLite consensus disorder prediction 511 544 - -
Gabi1321g00007 1107 SUPERFAMILY DNA-binding pseudobarrel domain 115 255 IPR015300 -
Gabi1321g00007 1107 FunFam Auxin response factor 975 1069 - -
Gabi1321g00007 1107 Coils Coil 625 645 - -
Gabi1321g00007 1107 MobiDBLite consensus disorder prediction 1088 1107 - -
Gabi1321g00007 1107 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Gabi1321g00007 1107 FunFam Auxin response factor 124 228 - -
Gabi1321g00007 1107 SUPERFAMILY CAD & PB1 domains 994 1058 - -
Gabi1321g00007 1107 CDD B3_DNA 125 217 IPR003340 GO:0003677
Gabi1321g00007 1107 MobiDBLite consensus disorder prediction 747 793 - -
Gabi1321g00007 1107 Pfam AUX/IAA family 977 1066 IPR033389 -
Gabi1321g00007 1107 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 1069 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi1321g00007 1107 ProSiteProfiles PB1 domain profile. 980 1073 IPR000270 GO:0005515
Gabi1321g00007 1107 SMART B3_2 126 228 IPR003340 GO:0003677
Gabi1321g00007 1107 FunFam Auxin response factor 289 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1321g00007 Gabi-Chr1321 73306 81957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1321g00007 1 488 B3 DNA Binding Superfamily AT1G19220 82.377 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi1321g00007 AUX_IAA 3.6e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1321g00007 K14486 - gmx:100804628 961.444