Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1321g00005 ATGGGAACGAAGAAGAGTACCCAAGTGATGCAAAATGAGAAGAACAATGAAAGCAGAGGAGATAACAATGTTTTTGCTTCTTGCTCTTTCTCTAGCCTTGGCCTCAACCCCACCTTATGTGACCAACTTCGTGAAAGGATGAGCTTTGAAGTTCCAACGTTGGTGCAAGCTCAAGCCATTCCTGTTATTCTCTCAGGGCGTCATGCTCTGGTTAATGCTGCCACGGGCACGGGGAAGACTGTTGCGTACCTGGCTCCAATTATTCATCACTTACTCAATTATGATAATCGAATCCAGCGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGCGAGCTATGTTTGCAGGTTTATGAAATTCTTCAGAAGTTATTGCATCGGTTTCATTGGATTGTTCCTGGATACATCATGGGTGGTGAAAATAGATCAAAAGAGAAAGCCAGGCTGCGCAAAGGCATATCAGTTCTTATAGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAATACATCATCATTCTTATACACAAATTTGCGCTGGATAATTTTTGATGAAGCTGACCATATTCTGGAATTAGGATTTGGAAAAGATATACAGGAAATACTAGATCTTTTAGGTTCAAGGAAAACGAGGCATGATGACCAAGAGAATGCAGTTCCTAGAGAATCTAAAATTCAAAGACAGAATTTGCTTTTATCTGCCACCTTAAACGAAAAAGTGAACCACCTTGCTAAGATTAGTCTAGACAATCCAGTGATGATTGGTCTTGATGGTAAAAAAATAGAACCAATTTCAACAATTGAAAGCCTTGATCCTTCAGAATCTGATGATGATAATAAAGACAAGTATTCCAGCAAAATGCCAACAGTTGGAGATTATAAAGTCCCCATACAGTTGATTCAGAAATACATGAAAGTGCCTTGTGGTTCAAGGCTCCCTGTACTTCTTTCGATTCTAAAGCATCTTTTTGAAAGGGAAACTTCACAAAAGGTTGTTGTATTCTTTTCAACATGTGACGCGGTCGACTTTCACTATTCAGTTTTAAGTGAATTCCACTTCTCATCCTATCCACAAACAGAAAAAGGGATGAGACAGATATTTCTTGGATGCAAAACTTTTCGGTTGCATGGTAATATGGAACAGGAGGACCGGAGAACCAGTTTTCAGGCCTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCCACTGATGTCTCTGCTAGGGGCTTGGATTTTCCAAAGGTTAGATGCATCATACAATATGATTCTCCAGGAGAAGCTACCGAATATGTGCATAGAGTTGGTAGAACTGCCCGGCTGGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAACCAGTTGAAATAGACTATTTGCAGGACTTGGAGAAACATGGTGTCTCACTAACAGAGTATCCTCTCCTCAAAGTGTTGAATAATTTCCCACTGTATGGACAAAAGAACGATATGAAGAAGTCTGTTTTTGTAGACACACATCCCTGGGTCCTCTGTCTCCAGAAGGCACTTGAATCCTTCATCATGTCCAAGCCCAAGATGGATGAACTTGCCAGGAAAGCATTTTGCTCTTGGGTCCGTGCATACACAGCCCATCGTGGTGAGCTAAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCATGTAGCTAAAAGCTTTGCATTGAAACAACAACCCTCCTTAGTTGGACAGTCATTCCAAAAGCAAATTAAGAAGAGAAAGAGATATGATAAGAAAATTGGGCTATCAAAAAAGAGAAAAGTTGCTAGTGTCACGTAA 1797 0.4057 MGTKKSTQVMQNEKNNESRGDNNVFASCSFSSLGLNPTLCDQLRERMSFEVPTLVQAQAIPVILSGRHALVNAATGTGKTVAYLAPIIHHLLNYDNRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISVLIATPGRLLDHLKNTSSFLYTNLRWIIFDEADHILELGFGKDIQEILDLLGSRKTRHDDQENAVPRESKIQRQNLLLSATLNEKVNHLAKISLDNPVMIGLDGKKIEPISTIESLDPSESDDDNKDKYSSKMPTVGDYKVPIQLIQKYMKVPCGSRLPVLLSILKHLFERETSQKVVVFFSTCDAVDFHYSVLSEFHFSSYPQTEKGMRQIFLGCKTFRLHGNMEQEDRRTSFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLTEYPLLKVLNNFPLYGQKNDMKKSVFVDTHPWVLCLQKALESFIMSKPKMDELARKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQIKKRKRYDKKIGLSKKRKVASVT 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1321g00005 598 Pfam DEAD/DEAH box helicase 54 244 IPR011545 GO:0003676|GO:0005524
Gabi1321g00005 598 Gene3D - 1 259 IPR027417 -
Gabi1321g00005 598 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 28 57 IPR014014 GO:0003724
Gabi1321g00005 598 MobiDBLite consensus disorder prediction 1 20 - -
Gabi1321g00005 598 Pfam Domain of unknown function (DUF4217) 506 566 IPR025313 -
Gabi1321g00005 598 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 33 305 IPR014013 GO:0005524
Gabi1321g00005 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 256 IPR027417 -
Gabi1321g00005 598 Pfam Helicase conserved C-terminal domain 319 442 IPR001650 -
Gabi1321g00005 598 Gene3D - 312 595 IPR027417 -
Gabi1321g00005 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 489 IPR027417 -
Gabi1321g00005 598 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 320 489 IPR001650 -
Gabi1321g00005 598 PANTHER RNA HELICASE 19 514 - -
Gabi1321g00005 598 SMART ultradead3 48 269 IPR014001 -
Gabi1321g00005 598 FunFam RNA helicase 2 258 - -
Gabi1321g00005 598 CDD DEADc_DDX31 39 257 - -
Gabi1321g00005 598 SMART helicmild6 359 442 IPR001650 -
Gabi1321g00005 598 SMART DUF4217_3 504 569 IPR025313 -
Gabi1321g00005 598 CDD SF2_C_DEAD 301 451 - -
Gabi1321g00005 598 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 60 256 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1321g00005 Gabi-Chr1321 23088 28631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1321g00005 29 474 Eukaryotic Initiation Factors Gene Family AT3G19760 24.554 4.03e-32 126