Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1321g00004 ATGGGAACGAAGAAGAGTACCCAAGTGATGCAAAATGAGAAGAACAATGAAAGCAGAGGAGATAACAATGTTTTTGCTTCTTGCTCTTTCTCTAGCCTTGGCCTCAACCCCACCTTATGTGACCAACTTCGTGAAAGGATGAGCTTTGAAGTTCCAACGTTGGTGCAAGCTCAAGCCATTCCTGTTATTCTCTCAGGGCGTCATGCTCTGGTTAATGCTGCCACGGGCACGGGGAAGACTGTTGCGTACCTGGCTCCAATTATTCATCACTTACTCAATTATGATAATCGAATCCAGCGCTCTGATGGAACATTTGGTTTAATTGATTCATTGGCAATAGCGTTGGTTCTTGTACCGACGCGCGAGCTATGTTTGCAGGTTTATGAAATTCTTCAGAAGTTATTGCATCGGTTTCATTGGATTGTTCCTGGATACATCATGGGTGGTGAAAATAGATCAAAAGAGAAAGCCAGGCTGCGCAAAGGCATATCAGTTCTTATAGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAATACATCATCATTCTTATACACAAATTTGCGCTGGATAATTTTTGATGAAGCTGACCATATTCTGGAATTAGGATTTGGAAAAGATATACAGGAAATACTAGATCTTTTAGGTTCAAGGAAAACGAGGCATGATGACCAAGAGAATGCAGTTCCTAGAGAATCTAAAATTCAAAGACAGAATTTGCTTTTATCTGCCACCTTAAACGAAAAAGTGAACCACCTTGCTAAGATTAGTCTAGACAATCCAGTGATGATTGGTCTTGATGGTAAAAAAATAGAACCAATTTCAACAATTGAAAGCCTTGATCCTTCAGAATCTGATGATGATAATAAAGACAAGTATTCCAGCAAAATGCCAACAGTTGGAGATTATAAAGTCCCCATACAGTTGATTCAGAAATACATGAAAGTGCCTTGTGGTTCAAGGCTCCCTGTACTTCTTTCGATTCTAAAGCATCTTTTTGAAAGGGAAACTTCACAAAAGGTTGTTGTATTCTTTTCAACATGTGACGCGGTCGACTTTCACTATTCAGTTTTAAGTGAATTCCACTTCTCATCCTATCCACAAACAGAAAAAGGGATGAGACAGATATTTCTTGGATGCAAAACTTTTCGGTTGCATGGTAATATGGAACAGGAGGACCGGAGAACCAGTTTTCAGGCCTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCCACTGATGTCTCTGCTAGGGGCTTGGATTTTCCAAAGGTTAGATGCATCATACAATATGATTCTCCAGGAGAAGCTACCGAATATGTGCATAGAGTTGGTAGAACTGCCCGGCTGGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAACCAGTTGAAATAGACTATTTGCAGGACTTGGAGAAACATGGTGTCTCACTAACAGAGTATCCTCTCCTCAAAGTGTTGAATAATTTCCCACTGTATGGACAAAAGAACGATATGAAGAAGTCTGTTTTTGTAGACACACATCCCTGGGTCCTCTGTCTCCAGAAGGCACTTGAATCCTTCATCATGTCCAAGCCCAAGATGGATGAACTTGCCAGGAAAGCATTTTGCTCTTGGGTCCGTGCATACACAGCCCATCGTGGTGAGCTAAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCATGTAGCTAAAAGCTTTGCATTGAAACAACAACCCTCCTTAGTTGGACAGTCATTCCAAAAGCAAATTAAGAAGAGAAAGAGATATGATAAGAAAATTGGGCTATCAAAAAAGAGAAAAGTTGCTAGTGTCACGTAA 1821 0.4042 MGTKKSTQVMQNEKNNESRGDNNVFASCSFSSLGLNPTLCDQLRERMSFEVPTLVQAQAIPVILSGRHALVNAATGTGKTVAYLAPIIHHLLNYDNRIQRSDGTFGLIDSLAIALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISVLIATPGRLLDHLKNTSSFLYTNLRWIIFDEADHILELGFGKDIQEILDLLGSRKTRHDDQENAVPRESKIQRQNLLLSATLNEKVNHLAKISLDNPVMIGLDGKKIEPISTIESLDPSESDDDNKDKYSSKMPTVGDYKVPIQLIQKYMKVPCGSRLPVLLSILKHLFERETSQKVVVFFSTCDAVDFHYSVLSEFHFSSYPQTEKGMRQIFLGCKTFRLHGNMEQEDRRTSFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLTEYPLLKVLNNFPLYGQKNDMKKSVFVDTHPWVLCLQKALESFIMSKPKMDELARKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQIKKRKRYDKKIGLSKKRKVASVT 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1321g00004 606 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 28 57 IPR014014 GO:0003724
Gabi1321g00004 606 Pfam Helicase conserved C-terminal domain 327 450 IPR001650 -
Gabi1321g00004 606 Gene3D - 320 603 IPR027417 -
Gabi1321g00004 606 MobiDBLite consensus disorder prediction 1 20 - -
Gabi1321g00004 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 471 IPR027417 -
Gabi1321g00004 606 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 60 264 IPR014001 -
Gabi1321g00004 606 Pfam DEAD/DEAH box helicase 54 252 IPR011545 GO:0003676|GO:0005524
Gabi1321g00004 606 SMART helicmild6 367 450 IPR001650 -
Gabi1321g00004 606 SMART DUF4217_3 512 577 IPR025313 -
Gabi1321g00004 606 Pfam Domain of unknown function (DUF4217) 514 574 IPR025313 -
Gabi1321g00004 606 PANTHER RNA HELICASE 19 522 - -
Gabi1321g00004 606 SMART ultradead3 48 277 IPR014001 -
Gabi1321g00004 606 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 328 497 IPR001650 -
Gabi1321g00004 606 CDD SF2_C_DEAD 309 459 - -
Gabi1321g00004 606 CDD DEADc_DDX31 39 265 - -
Gabi1321g00004 606 Gene3D - 1 267 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1321g00004 Gabi-Chr1321 23088 28631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1321g00004 29 482 Eukaryotic Initiation Factors Gene Family AT3G19760 24.123 5.20e-31 123