Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1321g00002 ATGGACAATCCAAGAATGGATAGTTGTAATGTCTTTACCGTGCTGAATAAATTGGATGCGCCATGTCCAACTGGTTGGGTTATTGACCCTAATAAGACCAAGTGCATTCTCCATGTTGGGAGGCCTCAATCTTGGAATGACTCAGAGACCTGTTGTAATAAGTATGGTGGGCATTTAGCATCATTAACATCGCTTGCGGAACTGCACTTTGCTCAGAGTCTATGTGGTGAATCTATAAACAGTTGCTGGATTGGTGGAAGAAGACTCAACTCTACAGCCAATTATCAGTGGATGTGGTCTGACAATTCTCAGTGGAATAACTCCATATTTCCTTTGGCTGATGTTCTGCCCAATTGTACTGGAACTAGATGTCATATGTACAGTACGGACAATTTATGTACTGTAATGACTAATAATTCAAAATCTCTCATGAGTGAGAGATGTGACAATCCTCATGCTTCTCTATGTGTACTTGATATGGATATGAAGTGTTCTCATAAGCACTGCCACAGGGAATACCTTATCATCATTGCAGTGGTGAGTGCATTGATACTCACTACAACATTATCAGTGGTAGTTTGGCTTCTTGTATATAAGCGGGGCAAGAAGAGAAGACGGTCTAGAAAACTATATGATCCAGCAGCTTCTCTTCCATCATGGAAAGTCTTTACCAAAGAGGAATTAAGGTCAATAACAAAGAATTTCAGTGAAGGTAACCGTCTTGTTGGGGATACAAAGACTGGTGGTACATACAGTGGGGTCCTAACGGATGGCTCAAGGGTTGCTGTTAAGAGATTAAAGAGGTCAAGCTTTCAGAGGAAAAAGGAGTTCTATTCTGAAATTGGCAGGGTTGCAAGGCTTCGTCATCCAAATTTGGTGGCTGTGATGGGGTGTTGCTATGGTCATGGTGACCGCTACATTGTTTATGAGTTTGTAGCTAATGGGCCCTTGGATAAATGGCTACATCACATACCAAGGGGAGGTCGCAGTTTAGATTGGGCTATGAGGATGAAAATTGCAATGACGCTTGCTCAAGGAATTGCGTTTCTACATGACAAGGTTAAGCCACAAGTTGTGCATCGAGATATACGTGCCAGTAACGTGCTGCTGGATGAGGAGTTTGGAGCACACCTTATGGGTGTTGGTCTGTCCAAGTTTGTGCCATATGAAGTGATGCACGAGAGGACTGTGATGGCAGGTGGAACTTATGGATATCTTGCTCCAGAGTTTGTGTATAGAAACGAGCTTACAACAAAGAGTGACGTTTATAGTTTTGGTGTGCTACTACTTGAAATAGTGAGTGGACGCAGACCTGCACAAGCAGTTGATTCTGTGGGTTGGCAGAGTATATTTGAATGGGCTACACCTCTTGTGCAAGCTCATCGCTATCCTGAACTCTTGGATCCTCATATATCTTCCTCATCTTCTAGTATCATCCCAGAGGCTAGTACCATCCAGAAGGTTGTTGACCTCGTTTATTCTTGCACACAGCATGTCCCTTCTATGCGCCCTAGAATGTCTCATGTTGTTCATCAGCTGCAACAGTTTTCCCAGCCGCCTGCAAAGTAA 1569 0.4328 MDNPRMDSCNVFTVLNKLDAPCPTGWVIDPNKTKCILHVGRPQSWNDSETCCNKYGGHLASLTSLAELHFAQSLCGESINSCWIGGRRLNSTANYQWMWSDNSQWNNSIFPLADVLPNCTGTRCHMYSTDNLCTVMTNNSKSLMSERCDNPHASLCVLDMDMKCSHKHCHREYLIIIAVVSALILTTTLSVVVWLLVYKRGKKRRRSRKLYDPAASLPSWKVFTKEELRSITKNFSEGNRLVGDTKTGGTYSGVLTDGSRVAVKRLKRSSFQRKKEFYSEIGRVARLRHPNLVAVMGCCYGHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIAMTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGAHLMGVGLSKFVPYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLVQAHRYPELLDPHISSSSSSIIPEASTIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQFSQPPAK 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1321g00002 522 ProSitePatterns Tyrosine protein kinases specific active-site signature. 358 370 IPR008266 GO:0004672|GO:0006468
Gabi1321g00002 522 SMART CLECT_2 22 157 IPR001304 -
Gabi1321g00002 522 Gene3D - 9 160 IPR016186 -
Gabi1321g00002 522 SUPERFAMILY Protein kinase-like (PK-like) 209 514 IPR011009 -
Gabi1321g00002 522 SMART tyrkin_6 245 513 IPR020635 GO:0004713|GO:0006468
Gabi1321g00002 522 FunFam C-type lectin receptor-like tyrosine-protein kinase 213 311 - -
Gabi1321g00002 522 Pfam Protein tyrosine and serine/threonine kinase 243 513 IPR001245 GO:0004672|GO:0006468
Gabi1321g00002 522 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 54 515 - -
Gabi1321g00002 522 Gene3D Phosphorylase Kinase; domain 1 211 311 - -
Gabi1321g00002 522 SUPERFAMILY C-type lectin-like 13 159 IPR016187 -
Gabi1321g00002 522 CDD CLECT 34 156 - -
Gabi1321g00002 522 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 312 522 - -
Gabi1321g00002 522 ProSiteProfiles Protein kinase domain profile. 236 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1321g00002 522 ProSiteProfiles C-type lectin domain profile. 31 157 IPR001304 -
Gabi1321g00002 522 Pfam Lectin C-type domain 42 156 IPR001304 -
Gabi1321g00002 522 Gene3D Transferase(Phosphotransferase) domain 1 312 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1321g00002 Gabi-Chr1321 9550 15631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1321g00002 52 519 Receptor kinase-like Gene Family AT1G52310 69.748 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Gabi1321g00002 PK_Tyr_Ser-Thr 1.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1321g00002 - - gmx:100779497 884.019