Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1321g00001 ATGGAAGTTAAGCCCATGGTTCTGCAATCTGTTCTCGTTCTGCTACCTTTGCTTGCTATTCATGGACTCGCTTCCAATGTGACACTTAATGAGACTTGTGGTTCTCTCAGTGGAGACACTAAAGCGCCATGTCCAACTGGTTGGGTTATTGACCCTAATAAGACCAAGTGCATTCTCCATGTTGGGAGGCCTCAATCTTGGAATGACTCAGAGACCTGTTGTAATAAGTATGGTGGGCATTTAGCATCATTAACATCGCTTGCGGAACTGCACTTTGCTCAGAGTCTATGTGGTGAATCTATAAACAGTTGCTGGATTGGTGGAAGAAGACTCAACTCTACAGCCAATTATCAGTGGATGTGGTCTGACAATTCTCAGTGGAATAACTCCATATTTCCTTTGGCTGATGTTCTGCCCAATTGTACTGGAACTAGATGTCATATGTACAGTACGGACAATTTATGTACTGTAATGACTAATAATTCAAAATCTCTCATGAGTGAGAGATGTGACAATCCTCATGCTTCTCTATGTGTACTTGATATGGATATGAAGTGTTCTCATAAGCACTGCCACAGGGAATACCTTATCATCATTGCAGTGGTGAGTGCATTGATACTCACTACAACATTATCAGTGGTAGTTTGGCTTCTTGTATATAAGCGGGGCAAGAAGAGAAGACGGTCTAGAAAACTATATGATCCAGCAGCTTCTCTTCCATCATGGAAAGTCTTTACCAAAGAGGAATTAAGGTCAATAACAAAGAATTTCAGTGAAGGTAACCGTCTTGTTGGGGATACAAAGACTGGTGGTACATACAGTGGGGTCCTAACGGATGGCTCAAGGGTTGCTGTTAAGAGATTAAAGAGGTCAAGCTTTCAGAGGAAAAAGGAGTTCTATTCTGAAATTGGCAGGGTTGCAAGGCTTCGTCATCCAAATTTGGTGGCTGTGATGGGGTGTTGCTATGGTCATGGTGACCGCTACATTGTTTATGAGTTTGTAGCTAATGGGCCCTTGGATAAATGGCTACATCACATACCAAGGGGAGGTCGCAGTTTAGATTGGGCTATGAGGATGAAAATTGCAATGACGCTTGCTCAAGGAATTGCGTTTCTACATGACAAGGTTAAGCCACAAGTTGTGCATCGAGATATACGTGCCAGTAACGTGCTGCTGGATGAGGAGTTTGGAGCACACCTTATGGGTGTTGGTCTGTCCAAGTTTGTGCCATATGAAGTGATGCACGAGAGGACTGTGATGGCAGGTGGAACTTATGGATATCTTGCTCCAGAGTTTGTGTATAGAAACGAGCTTACAACAAAGAGTGACGTTTATAGTTTTGGTGTGCTACTACTTGAAATAGTGAGTGGACGCAGACCTGCACAAGCAGTTGATTCTGTGGGTTGGCAGAGTATATTTGAATGGGCTACACCTCTTGTGCAAGCTCATCGCTATCCTGAACTCTTGGATCCTCATATATCTTCCTCATCTTCTAGTATCATCCCAGAGGCTAGTACCATCCAGAAGGTTGTTGACCTCGTTTATTCTTGCACACAGCATGTCCCTTCTATGCGCCCTAGAATGTCTCATGTTGTTCATCAGCTGCAACAGTTTTCCCAGCCGCCTGCAAAGTAA 1635 0.4361 MEVKPMVLQSVLVLLPLLAIHGLASNVTLNETCGSLSGDTKAPCPTGWVIDPNKTKCILHVGRPQSWNDSETCCNKYGGHLASLTSLAELHFAQSLCGESINSCWIGGRRLNSTANYQWMWSDNSQWNNSIFPLADVLPNCTGTRCHMYSTDNLCTVMTNNSKSLMSERCDNPHASLCVLDMDMKCSHKHCHREYLIIIAVVSALILTTTLSVVVWLLVYKRGKKRRRSRKLYDPAASLPSWKVFTKEELRSITKNFSEGNRLVGDTKTGGTYSGVLTDGSRVAVKRLKRSSFQRKKEFYSEIGRVARLRHPNLVAVMGCCYGHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIAMTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGAHLMGVGLSKFVPYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLVQAHRYPELLDPHISSSSSSIIPEASTIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQFSQPPAK 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1321g00001 544 Pfam Protein tyrosine and serine/threonine kinase 265 535 IPR001245 GO:0004672|GO:0006468
Gabi1321g00001 544 Gene3D Phosphorylase Kinase; domain 1 233 333 - -
Gabi1321g00001 544 SMART CLECT_2 44 179 IPR001304 -
Gabi1321g00001 544 SUPERFAMILY Protein kinase-like (PK-like) 231 536 IPR011009 -
Gabi1321g00001 544 CDD CLECT 56 178 - -
Gabi1321g00001 544 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 76 537 - -
Gabi1321g00001 544 FunFam C-type lectin receptor-like tyrosine-protein kinase 235 333 - -
Gabi1321g00001 544 Gene3D Transferase(Phosphotransferase) domain 1 334 540 - -
Gabi1321g00001 544 ProSiteProfiles C-type lectin domain profile. 53 179 IPR001304 -
Gabi1321g00001 544 Pfam Lectin C-type domain 64 178 IPR001304 -
Gabi1321g00001 544 SUPERFAMILY C-type lectin-like 27 181 IPR016187 -
Gabi1321g00001 544 ProSitePatterns Tyrosine protein kinases specific active-site signature. 380 392 IPR008266 GO:0004672|GO:0006468
Gabi1321g00001 544 ProSiteProfiles Protein kinase domain profile. 258 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1321g00001 544 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 334 544 - -
Gabi1321g00001 544 SMART tyrkin_6 267 535 IPR020635 GO:0004713|GO:0006468
Gabi1321g00001 544 Gene3D - 26 182 IPR016186 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1321g00001 Gabi-Chr1321 9380 15631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1321g00001 74 541 Receptor kinase-like Gene Family AT1G52310 69.748 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Gabi1321g00001 PK_Tyr_Ser-Thr 2.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1321g00001 - - gmx:100779497 915.99