Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1320g00003 ATGGACACCAGTCTTTACATAGCAAAGAAAACACACTACAATATTTTCCCTAACCAGCAATACATTGATCATGAGGCAGCCACCATAGACATGCACCACATCAATCATCCCCAAAATAGTAGTCACACATCCACAAGCCATTCTTCTGATTCGGGAGGAACTTGTACTAGTGATGAAGGTAAATTGGCTTCCAAGCTTCTTAAAGAGTGTGCTAAAGCAATCTCTGATAAAGACTCTGGCAAAATCCACCATCTTCTATGGATGTTAAACGAGCTTGCATCCCCTTATGGAAACTGTGAGCAAAAATTAGCCTCCTACTTCTTGCAAGCTCTATTTTGTAAGGCCACAGAGTGTGGTCAAAGGTGCTACAAGACCCTTTCCTCTGTAGCTGAGAAAAACCACTCCTTCAATTCAGCTAGAAAGTTAATACTCAAGTTTCAAGAGGTAAGCCCTTGGACAACTTTTGGACACGTGGCATCAAATGGTGCCATTTTAGAAGCCTTCGAAGGCGAGACAACACTACATATTATTGATATAAGCAACACCCTTTGCACTCAATGGCCTACTTTGTTGGAAGCCTTGGCTACAAGAAATGATGAAACCCCTAACTTGAAGCTCACAGTTGTAGCTATAACGGGTAGCATAGTAGGGTCTGTGATGAACGAAGTTGGAAGAAGAATGGAGAAGTTTGCTAGGTTAATGGGAGTGCCCTTTGCGTTTAACATGATTAATGGGCTAGAACATATTGGAATGCTCACAAAAGAAGGGTTAGGAGTTAAAGAGGGTGAGGCTATTGCCGTGAATTGTATTGGGGCATTGAGAAGTGTTGAAGAAGATGATAGGGGAGCCTTTATTCGCATGTTGAAATCGCTTGATCCTCGAGTTGTGACGGTCGTTGAAGAGGAAGGTGATTTTTGCAGCTCAAGAAATGACTTCTTCAAGAGCTTTGAAGAGTGTCTTAGGTTTTACACCCTTTACTTTGAGATGCAAGAGGAAAGCTTTCCCTCAATCAGTAATGAAAGATTGATGCTAGAGAGGGAGTGCTCGAGAAACATAATTAGGGTTTTGGCTTGCAATGATGATGATGAATTTGGGTATGATATTTGTGAGAGAAGGGAGAGAGGAACACAATGGTCTTGGAGGCTTAAGGAGGAATTTTTCCCAATTGGGTTCAGTGATGATGTTGTGGATGATGTCAAGGCATTACTCAAAAGGTACCGTCCTGGGTGGTCCCTTGTGGTGCCACAAGGAAATGATCATCTTTCAGGAATTTACTTGACATGGAAGGAGGAACCGGTTGTTTGGGCTTCAGTATGGAAACCCTAA 1326 0.4238 MDTSLYIAKKTHYNIFPNQQYIDHEAATIDMHHINHPQNSSHTSTSHSSDSGGTCTSDEGKLASKLLKECAKAISDKDSGKIHHLLWMLNELASPYGNCEQKLASYFLQALFCKATECGQRCYKTLSSVAEKNHSFNSARKLILKFQEVSPWTTFGHVASNGAILEAFEGETTLHIIDISNTLCTQWPTLLEALATRNDETPNLKLTVVAITGSIVGSVMNEVGRRMEKFARLMGVPFAFNMINGLEHIGMLTKEGLGVKEGEAIAVNCIGALRSVEEDDRGAFIRMLKSLDPRVVTVVEEEGDFCSSRNDFFKSFEECLRFYTLYFEMQEESFPSISNERLMLERECSRNIIRVLACNDDDEFGYDICERRERGTQWSWRLKEEFFPIGFSDDVVDDVKALLKRYRPGWSLVVPQGNDHLSGIYLTWKEEPVVWASVWKP 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1320g00003 441 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 53 430 IPR005202 -
Gabi1320g00003 441 ProSiteProfiles GRAS family profile. 54 440 IPR005202 -
Gabi1320g00003 441 MobiDBLite consensus disorder prediction 35 56 - -
Gabi1320g00003 441 Pfam GRAS domain family 65 440 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1320g00003 Gabi-Chr1320 17328 18653 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1320g00003 33 441 GRAS Transcription Factor Family AT4G37650 50.235 8.74e-138 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi1320g00003 GRAS 1.3e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1320g00003 - - pop:18106876 622.468