Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1313g00020 ATGGAAATTGATCTGAACGATGCAGTGACTGAGGTTGAGAAGAATGCATCTTGTAATGGGGACTGTGAGAAAGGTGTTTGTGTTTGTGTTTGTTGTTTGTCATCTCCAACTTGTTCATCTTCTAGTTCCTCTTCAGCTCGTGTGTCTTCTTCTTATCTCGAGCTATGGCATGCTTGTGCTGGACCCCTCACTTCCCTGCGAAAGAAAGGGAATGTTGTAGTCTATTTTCCACAAGGTCACTTAGAACAAGTTGCATCTTTCTCTCCCTTCTCGCCAATGGAGATGCCTACCTATGATCTTCAGCCACAGATCTTTTGCAGAGTTGTCAATGTCCAACTACTTGCCAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCACAGGCTGAGTTTGCAGGGATGTATTTGGAGGGTAAAGAGCTTGAGGAATTGGGATCAGATGAAGAAGGAAATGGAAGAACACCAACAAAATCAACCCCTCACATGTTCTGCAAAACGCTTACTGCCTCTGATACAAGCACTCATGGGGGATTCTCTGTGCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAAAGACCCTCTCAAGAGCTTGTTGCAAAAGACCTGCATGGTGTGGAATGGAAATTTCGCCATATTTACAGAGGTCAGCCAAGGCGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTATATCTGGCGATGCAGTGCTCTTTCTAAGGGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGAGCTGCTCGACCGAGAAACGGTCTCCCTGAATCCATTGTTGGTAACCAGAGTTGTTATCCCAATTTCCTTTCTTCTGTGGCTAATGCTATATCCGCAAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCAGATTTTGTTGTCCACTACCAAAAATATGTCAAAAGCATCAAGAATCCAGTGACCATCGGGACAAGATTCAAAATGAAATTTGAAATGGATGAATCTCCAGAAAGAAGGTGTAGTGGTGGTATAGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCTAAATCTAAATGGAGGTGCTTGATGGTCAGATGGGATGAAGATATTGAGACTAATCATGAAGATAGAGTATCTCCTTGGGAGATTGATCCTTCTGCTTCCCTCCCTCCATTGAGCATTCAATCTTCCCGAAGGCTGAAGAAACTGCGGACAGGTCTGCAGGCGGCCTCACCTAGTCACCCCATCACTGCAGAAGGCAGTGGGTTTATGGACTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTATGTCACTATATTATGGATGTGACACAATAACTAAGCAGCCAGAATTTGAGATCAGGTCTACAAGTCATCCTAATCTTGCATCAACTGGACTAAGAAAGATTACTGCTGCTGAGCTTCTGAGGGTTCACCCTTCTAGTTATGCAGGCTTCGCGGAAACTAACAGGTTTCCCAAGGTCTTGCAAGGTCAAGAAATATGTCCATTGAGATCCCTGACAGGAAAGGCTGATTTAATAAACCTTGGTTCTTGGGGCAAACCCAATATCAGTAGCACAAATTACAACCTGCATCAAGCAACCAAACCTAACTTTCACTCTTCAGGACCAGAAGTTCTTCAAACTGCATATTTTCCTTATGGTGATATTCACAAACCTGGTCAAGGTAGCAGCTTGTTGTGCTCTAAACCAACTAATTTCCAACGGGAGAATTTCCCATTTAACACACCTTCTACTCAGCCGGGGATCATGAGAAATGAAGTTGGACGGTCAGATCACACAACCCCAAATGAGCAGAAGCTACAGGACAATATTTCTGGTGCTGCTTCTTTAGGGGCAAACATGAGGATTCCAAATGATGACACTTTCAAGGGGAAGGTGAATGCTTGTAAACTATTTGGTTTTCCCTTGTCCGGGGAAACTACCAACCAAAATTCACAGAACTCTGCTAAAAGAAGTTGCACAAAGGTCCACAAGCAAGGTAGCTTAGTTGGAAGGGCCATTGATCTCTCAAGATTGAGCAGCTACAATGACCTGCTGAGTGAACTAGAGAGACTATTTGGCATGGAAGGTCTTCTAAGAGATCCTGATAAGGGATGGAGAATCCTTTACACTGACAGTGAAAATGACATTATGGTTGTTGGGGATGACCCATGGCATGAGTTCAATGATGTGGTATCCAAGATCCATATATATACACAAGAAGAAGTGGATAAGATGACAATTGGGATGATGAATGATGATACCCAGAGCTGTTTGGAACAGACACCAATGATTATGGAGGCTTCTAAATCTTCCTCAGTGGGTCAGCCAGATTCTTCTCCAACAATAGTTAGAATCTAG 2424 0.4319 MEIDLNDAVTEVEKNASCNGDCEKGVCVCVCCLSSPTCSSSSSSSARVSSSYLELWHACAGPLTSLRKKGNVVVYFPQGHLEQVASFSPFSPMEMPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAEFAGMYLEGKELEELGSDEEGNGRTPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGNQSCYPNFLSSVANAISAKSMFHVFYSPRASHADFVVHYQKYVKSIKNPVTIGTRFKMKFEMDESPERRCSGGIVTGMSDLDPYKWPKSKWRCLMVRWDEDIETNHEDRVSPWEIDPSASLPPLSIQSSRRLKKLRTGLQAASPSHPITAEGSGFMDFEESVRSPKVLQGQENTGFMSLYYGCDTITKQPEFEIRSTSHPNLASTGLRKITAAELLRVHPSSYAGFAETNRFPKVLQGQEICPLRSLTGKADLINLGSWGKPNISSTNYNLHQATKPNFHSSGPEVLQTAYFPYGDIHKPGQGSSLLCSKPTNFQRENFPFNTPSTQPGIMRNEVGRSDHTTPNEQKLQDNISGAASLGANMRIPNDDTFKGKVNACKLFGFPLSGETTNQNSQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLSELERLFGMEGLLRDPDKGWRILYTDSENDIMVVGDDPWHEFNDVVSKIHIYTQEEVDKMTIGMMNDDTQSCLEQTPMIMEASKSSSVGQPDSSPTIVRI 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1313g00020 807 Pfam B3 DNA binding domain 166 267 IPR003340 GO:0003677
Gabi1313g00020 807 SUPERFAMILY DNA-binding pseudobarrel domain 158 277 IPR015300 -
Gabi1313g00020 807 Gene3D - 674 768 - -
Gabi1313g00020 807 FunFam Auxin response factor 674 768 - -
Gabi1313g00020 807 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 51 768 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi1313g00020 807 Pfam Auxin response factor 292 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi1313g00020 807 Gene3D - 330 402 - -
Gabi1313g00020 807 SUPERFAMILY CAD & PB1 domains 679 758 - -
Gabi1313g00020 807 ProSiteProfiles PB1 domain profile. 679 763 IPR000270 GO:0005515
Gabi1313g00020 807 FunFam Auxin response factor 164 268 - -
Gabi1313g00020 807 CDD B3_DNA 164 266 IPR003340 GO:0003677
Gabi1313g00020 807 FunFam Auxin response factor 329 402 - -
Gabi1313g00020 807 SMART B3_2 166 268 IPR003340 GO:0003677
Gabi1313g00020 807 Gene3D - 164 268 IPR015300 -
Gabi1313g00020 807 ProSiteProfiles B3 DNA-binding domain profile. 166 268 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1313g00020 Gabi-Chr1313 180511 186572 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1313g00020 48 807 B3 DNA Binding Superfamily AT5G60450 60.733 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi1313g00020 B3 2.1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1313g00020 - - gmx:100812909 1409.43