Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1313g00008 ATGGTAAATAGTCCAAGAAACATGAAGATAGGTGACACAAACACCCCAACTTCCTCTCCTCCATTTTCTCACTCTTGTACTTCATCATCTTCCCCTCCACAATCTCTATCTCCCCAAGTTGTTATGAGCCCTTGCGCTGCTTGCAAGATCTTGAGGCGAAGATGTGCAGAGAAATGTGTGTTGGCGCCTTATTTCCCTCCCACTGAACCTGCCAAGTTTACAACTGCACACAGAGTCTTCGGAGCCAGCAACATCATCAAGTTCTTACAGGAACTTCCAGAGTCTCAACGAGCTGATGCAGTGACCAGCATGGTTTACGAGGCTAGTGCAAGAGTAAGAGACCCTGTATACGGTTGTGCAGGTGCAATTTGCCAGCTCCAGAAGCAAGTTAACGAGCTTCAAGCACAATTAGCAAAAGCACAAGAAACTCCACAGGAATCACAACAACAATCAGTGGACAACTTCATTTCAAGTCCTCCTCACAGCGGCGGCTATCTAAACAATATGAACTTCTTTGAGGAGAACACCAACCTTAACTCATTGTGGGAGCCGCTTTGGACATGA 564 0.4628 MVNSPRNMKIGDTNTPTSSPPFSHSCTSSSSPPQSLSPQVVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARVRDPVYGCAGAICQLQKQVNELQAQLAKAQETPQESQQQSVDNFISSPPHSGGYLNNMNFFEENTNLNSLWEPLWT 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1313g00008 187 ProSiteProfiles LOB domain profile. 43 144 IPR004883 -
Gabi1313g00008 187 Pfam Lateral organ boundaries (LOB) domain 44 141 IPR004883 -
Gabi1313g00008 187 MobiDBLite consensus disorder prediction 1 38 - -
Gabi1313g00008 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 43 150 - -
Gabi1313g00008 187 Coils Coil 123 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1313g00008 Gabi-Chr1313 118716 120409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1313g00008 39 187 AS2 family AT1G07900 62.130 9.28e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi1313g00008 LOB 1.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1313g00008 - - gmx:100819336 269.626