Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1313g00003 ATGGATCCTTCTAATGGACAACCCCAGCAAATGTCTAACCAGTCACTGGAGAACATGTTAGGTTGCTCAAAAGCACAACAAGAGAGGAAGCCAAGACCTCAGCCAGAACAAGCTCTGAACTGCCCAAGATGTGACTCCACCAACACAAAATTTTGTTACTACAACAATTATAGTCTTTCTCAGCCAAGATATTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGTGGAGGATGCAGGAGGAACAAGAGGTCATCATCTTCATCTTCAAAGAAGGCTCAGGATCAGACATTCACACCCAATTCAAACCCACTCACTAGCCTTCCTCATTTGTCTTATGACTCCAGTGACTTCACCCTAGCATTATCTAGGTTCCAAAAACAATCATGTGGGCAATTGGGTTATGATGACCATGATCTTTCGATTTTGGGGAATCCCTCAAGCTCCTTTTGTGATATTCTTGGCAACACAGGCATGAACCCTTCGTCGACAAACCCTGGATTCTTGGATGGACTTAGAGCTGGGTTCCAAGGAACCCAGAATGATATTCAAAATATGTACTTTATGCATGGAAATGGGGACATGGGAGAGGTGGATAATGGAAATTCTTGTGGGGTTGGGGTTAGTGGAGATATGATGCTCCCTTATGATCAAGAAATGAGCAATGCAGCCATGAAACAAGAAGTTTATAGTGGCAGGGAACAAAGTGAAAGTAAGGTAATGGGGGGTTTCCCATGGCAGCTCAATGGAGACACAAACATGGCTGAATTTGATTCAGGAAGAGCAAGTTGGAATGGTTTCACATCTTCTTGGCACGGACTTCTTCATAGTCCCCTCATGTAG 870 0.4414 MDPSNGQPQQMSNQSLENMLGCSKAQQERKPRPQPEQALNCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSSSSSKKAQDQTFTPNSNPLTSLPHLSYDSSDFTLALSRFQKQSCGQLGYDDHDLSILGNPSSSFCDILGNTGMNPSSTNPGFLDGLRAGFQGTQNDIQNMYFMHGNGDMGEVDNGNSCGVGVSGDMMLPYDQEMSNAAMKQEVYSGREQSESKVMGGFPWQLNGDTNMAEFDSGRASWNGFTSSWHGLLHSPLM 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1313g00003 289 MobiDBLite consensus disorder prediction 84 118 - -
Gabi1313g00003 289 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 195 IPR045174 GO:0003700|GO:0006355
Gabi1313g00003 289 MobiDBLite consensus disorder prediction 90 118 - -
Gabi1313g00003 289 MobiDBLite consensus disorder prediction 1 22 - -
Gabi1313g00003 289 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Gabi1313g00003 289 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Gabi1313g00003 289 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Gabi1313g00003 289 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1313g00003 Gabi-Chr1313 41666 43547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1313g00003 1 289 C2C2-Dof Transcription Factor Family AT2G28510 41.456 6.33e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi1313g00003 zf-Dof 2.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1313g00003 - - gmx:100795408 429.483