Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi130g00007 ATGCAGGAAATACATTCCATCGGAGGAGGCCGGTTCTTCGGCGGCGGAAGCGGCGGCGGAGGAGACAGGAGGCTCAGACCTCACCACCACAACCACCAGCAGAATCACCAGGCTTTGAAGTGTCCACGCTGTGATTCACTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCACAGCCTCGCCACTTTTGCAAAAACTGCCGTCGATACTGGACCAAGGGCGGCGTCCTCCGCAACGTCCCCGTCGGTGGCGGTTGTCGCAAATCAAAGCGCTCTAATAAGCCCAAGAACAACTCATCCTCCTCCTCCGAAGCCGCCGCTGCGCCAACCACATCGGTGCAGCCGCCGGAGCAGGAGAACAAGTCGAACTCTCATTCCAGCAGTGAGAGTTCCAGCCTCACCGCCGCCAACACCATCGCCGCGGCAACGGAGGCTGTGTCGGCGCCGACTTTAAACTCCGATTCAAACAACAACGTGTTGATCACATCAAACCCTGGTTTTGAGACTGGTGCGTTGGAACAGGGAGCAGGGGACTGCGGTATTTTCTCTGAGATTGGAACCTTCACGAACTTGATCACTTCGTCCAACGAGGCATTGGCGTTTGGATTCGGTAACAGTACTATGCCAGATGCGTCGTCGTTTCAGTGGCAGCACCAGAAGGTGATGACCATGAGCGGTGATCATAATCTTCTTCATCATCATCATCATCATCATCATCATGAAGAGGAATTGAAGCTTCCGGAGAATCTCGGTGCTGGTTCCTTGCTTGATCATAGTACTCTTCCGGTTGATTTGTCGGTGCTGCAAAATAAAACCGGTCACGGAGGATTTGGACCGTTGGATTGGCAAGGTGGTGCTGATCAAGGTTTGTTTGATCTTTCTAACACCGTTGATCAGCCTTACTGGTCTCACACTCACTGGGCTGATCAGGACAGTTCTACTCTCTTTCATCTTCCTTGA 966 0.5248 MQEIHSIGGGRFFGGGSGGGGDRRLRPHHHNHQQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKNNSSSSSEAAAAPTTSVQPPEQENKSNSHSSSESSSLTAANTIAAATEAVSAPTLNSDSNNNVLITSNPGFETGALEQGAGDCGIFSEIGTFTNLITSSNEALAFGFGNSTMPDASSFQWQHQKVMTMSGDHNLLHHHHHHHHHEEELKLPENLGAGSLLDHSTLPVDLSVLQNKTGHGGFGPLDWQGGADQGLFDLSNTVDQPYWSHTHWADQDSSTLFHLP 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi130g00007 321 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 29 229 IPR045174 GO:0003700|GO:0006355
Gabi130g00007 321 MobiDBLite consensus disorder prediction 1 38 - -
Gabi130g00007 321 MobiDBLite consensus disorder prediction 97 137 - -
Gabi130g00007 321 MobiDBLite consensus disorder prediction 84 137 - -
Gabi130g00007 321 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Gabi130g00007 321 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Gabi130g00007 321 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi130g00007 Gabi-Chr130 96757 99291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi130g00007 22 321 C2C2-Dof Transcription Factor Family AT5G60850 42.444 2.33e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gabi130g00007 zf-Dof 3.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi130g00007 - - gmx:778097 318.546